Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1832 ATGGCTGCACTTGCTGAGGTTCCCACTGATGCTGCAGCTACAAACCAATTGGACCCAAAACCAAAGCCAGAATCTGAATTCAATGTCCAGAAACTTGTTGACATGTTCACAAAGTTGAACCCTTTGGCCAAGGAGTTCTTCCCTTCGTCTTATACTCACCATGATCATCTTCATCAGAGCTATAATCAGTTCTCACCCAACATTTTCCTGGCCAACAACAACCCCTTAGATATTGATAATCACCCAAGGAATCGAAGGAGAAGAAATAATTATAACCAGGGGGACAGAAGGTTGAATGGAAGAGTGAAGGCTCAGAGAGAGGATAGCATCAAAAGAACAGTATATGTGTCTGATATTGATCAGCATGTTACTGAGGAGAGGCTTGCTGCCTTATTCAGCAATTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTTCGTTTTGCATTTGTGGAGTTCACAGATGAGGACGGTGCAAGGGCAGCTTTACGACTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTTCTTCCTAGGTCAGCTGATGAGCGGGAAATGTGTGCCCGAACTGTCTACTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTCAATCATCTTGTGGTGAGGTTACTCGCTTGAGGCTTTTAGGAGATCGTGTGCATTCAACTCGAATTGCTTTCGTTGAATTTGCATTGGCTGAAAGTGCCATTATAGCATTAAGTTGTAGTGGGATGCTATTGGGAACCCAGCCTGTCAGGGTGAGCCCTTCAAAGACACCTGTGAGGACTAGGGTTGTTCGCCCGACAGCACATTAG 894 0.4374 MAALAEVPTDAAATNQLDPKPKPESEFNVQKLVDMFTKLNPLAKEFFPSSYTHHDHLHQSYNQFSPNIFLANNNPLDIDNHPRNRRRRNNYNQGDRRLNGRVKAQREDSIKRTVYVSDIDQHVTEERLAALFSNCGQVIDCRICGDPHSVLRFAFVEFTDEDGARAALRLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSADEREMCARTVYCTNIDKKVSQAEVKNFFQSSCGEVTRLRLLGDRVHSTRIAFVEFALAESAIIALSCSGMLLGTQPVRVSPSKTPVRTRVVRPTAH* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1832 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 285 IPR000504 GO:0003723
Dod03g1832 297 Gene3D - 197 290 IPR012677 -
Dod03g1832 297 Gene3D - 73 188 IPR012677 -
Dod03g1832 297 SUPERFAMILY RNA-binding domain, RBD 101 188 IPR035979 GO:0003676
Dod03g1832 297 MobiDBLite consensus disorder prediction 79 104 - -
Dod03g1832 297 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 296 - -
Dod03g1832 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 296 - -
Dod03g1832 297 MobiDBLite consensus disorder prediction 1 24 - -
Dod03g1832 297 CDD RRM1_CID8_like 110 189 IPR034823 -
Dod03g1832 297 SUPERFAMILY RNA-binding domain, RBD 200 289 IPR035979 GO:0003676
Dod03g1832 297 MobiDBLite consensus disorder prediction 73 104 - -
Dod03g1832 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Dod03g1832 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 276 IPR000504 GO:0003723
Dod03g1832 297 SMART rrm1_1 210 281 IPR000504 GO:0003723
Dod03g1832 297 SMART rrm1_1 113 183 IPR000504 GO:0003723
Dod03g1832 297 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Dod03g1832 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1832 Dod-Chr3 30780555 30786354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1832 113 282 Eukaryotic Initiation Factors Gene Family AT4G34110 29.714 9.34e-12 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1832 03 30780555 30786354 Dod03g1832 03 30780555 30786354 ECH