Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0438 ATGGAGCAAGAAGGAGGTGGCAGAGGAGGTGCCGGTGGAGATGGAGGAGACAAGAATCAGCCTCAGGAGACGACGCAGCGAGGAGAAGCTGCTCAGGTTGAGGTTCAGGCGGAGGTTCAGCCTGAGCCTCAGGCTCCACCTCGGCTACCTCAGCAACCTGTGCAGTGTCCACGCTGTGACTCTCTCAACACAAAGTTCTGCTACTACAACAACTACAGCATGTCACAGCCCCGTTACTTCTGCAAGACCTGCAGGAGGTACTGGACCCATGGTGGAACCTTGAGGAACGTTCCTGTTGGTGGTGGTTGCCGCAAGGGGAAGCGTGGTGCTTGTGCCAAGAATTCTCCATCATCATCTTCTGAGAATTCTGCTTCTTCTTCCCGCTCCAACCGGCAACAGCCACTGCCACAGCCACAGCCACCATCTCAGGATCAGCTTCTTGTTGTTCAAGCACAGCCACCAAACCTGACACCTATGGTGGGGGCTAGAGACCCTCCTCCTTCCTTGGGGGCGGTCCCCTCTGTCACTCCCTTTTTTCAAGGTGGTCTTGGTGGATACCTGTCTTCTCTTGGAGTTGGAGGGATTCATCACTCACTTTCACTGAATCCATCACACCCTTTTGATCAGGCTCTGATGAACGCTGTTGGTGTTGGTGGTTCTAATCTGGATGTTGTGTCTGGTTTCAATGGGGCTAATTCTCCTGGACCACTTCGCTTCTCTCAGTACGTCCAATTGGGTGGGGGAGAGAGGGATGTGGGGCCTCTGTATCCACCTGCAGAACAACAAAGCTTGATTCCATCAACCATGGCTGCTAATAGCAGTGCTGCTGCTGCTGCTGCTGTTGCTACTCACCGTGATTGGACTCACAGGTTCATCACTAATGCTGCTAACAATATTAGGGCCACTGATGGCTCTATGTGGAGCACTGTCAGCACCACTAATGTTAGTGGTAACTCTCAGAGGAATGTTGCTGCTGCTACTGGTTCTTCTTCTTCTGCTTCTGCTTTGATGATGCCAAATCAGTGGCCGAATGTTCCAGGTTTTGGCCCTCCCCCATCATCTTTCTGA 1068 0.5253 MEQEGGGRGGAGGDGGDKNQPQETTQRGEAAQVEVQAEVQPEPQAPPRLPQQPVQCPRCDSLNTKFCYYNNYSMSQPRYFCKTCRRYWTHGGTLRNVPVGGGCRKGKRGACAKNSPSSSSENSASSSRSNRQQPLPQPQPPSQDQLLVVQAQPPNLTPMVGARDPPPSLGAVPSVTPFFQGGLGGYLSSLGVGGIHHSLSLNPSHPFDQALMNAVGVGGSNLDVVSGFNGANSPGPLRFSQYVQLGGGERDVGPLYPPAEQQSLIPSTMAANSSAAAAAAVATHRDWTHRFITNAANNIRATDGSMWSTVSTTNVSGNSQRNVAAATGSSSSASALMMPNQWPNVPGFGPPPSSF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0438 355 Pfam Dof domain, zinc finger 52 108 IPR003851 GO:0003677|GO:0006355
Dod03g0438 355 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Dod03g0438 355 MobiDBLite consensus disorder prediction 112 133 - -
Dod03g0438 355 MobiDBLite consensus disorder prediction 335 355 - -
Dod03g0438 355 MobiDBLite consensus disorder prediction 1 54 - -
Dod03g0438 355 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Dod03g0438 355 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 351 IPR045174 GO:0003700|GO:0006355
Dod03g0438 355 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 17 351 - -
Dod03g0438 355 MobiDBLite consensus disorder prediction 95 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0438 Dod-Chr3 5359158 5360384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0438 47 136 C2C2-Dof Transcription Factor Family AT5G60200 60.000 5.00e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod03g0438 zf-Dof 6.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0438 - - gmx:102668884 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1453 04 36186005 36187752 Dod03g0438 03 5359158 5360384 PCT