Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2472 ATGTCGGAACCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGGTGCCGGAGATGCCGGCCGCATCCGGTGACTCTACTGGAGCTCCGGCTACATCTTCTGGCGACTTTGTCGGTGATGGTGCTGACCAGAATCGTGCTTCTTCCACCAACTCTTCCAACGCCAACAACAAGGGTGAAGAAGAAAGTGATATTGACCAGGACACATTGGCAGAGAAACTAACTGAGGATAATAACGAAGATGGAGCCCCCACGCAATCATCAGAAGAGGTCACCAATCTAGATACAGCCTCAAGATCAGGTGAAGAATCTGTTACCCTCTCCACTGAGAAGGAGGCTACCTCACTGAAAACTTCAAGGACTGAAGAAAAGGGTGAGAATTCTCAAGAAAAGATGCTGAAAAAGCCTGACAAAATACTGCCTTGCCCCCGCTGTAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCACGCCATTTCTGCAGGAATTGCCAGAGATACTGGACTGCTGGTGGGGCCATGAGGAATGTTCCTGTTGGTGCCGGTCGCCGGAAGAACAAGAACTGTGCTTCTCACCATCGCCAAATAACTGTTCCTGAAGCAGCACTCCAGAATCCTCAGTCAGATTTGCCAAATGGAATCCAACATCCTTCCTTGAATTGTAATAGCGCAGTCCTTAAATTTGGGACTGATACACGCTTGTGTGAATCAATGGCATCAGTTTTGGACCTTGCAGATAAAACGGTGAACAATGGCACAAGTAATGGACTTAATAGACCAGAAGAACTAAGAATTCCTGTTCCCTATGCTGGTGGAGAAAATGGGAATGATCATCTCAATAGATCTTCTGTCACATCAACACAGCCAGTAGAAGGTGCAACCATCAATAAGTCCCAAGAACAAGTTGTGCAGAATTTTCCGGGCTTGCCATCTCAAGCTCCCTACTTTCCTGGTGCCCCTTGGCCTTTCCCATGGAATCCAGCACAGTGGAGCTCTCCAGTACCCCCACCTGCCTTTTTCCCACCAGCATTTACCGTGCCATTCTATACAGCTCCAGCTTATTGGGGTTGTACTGTGCCGGGCACATGGAACATCCCATGGATAGCACAACCATCTTCACCAAATAGTACAGCCCCTAACTCTGGCCCTAACTCCCCAACCTTAGGGAAACATTCAAGGGAAGAAAACTCGGTCAAATCAAATGACGCCGCAGGTGGGGATGAACAAAGCAAAGAAACCAATAAAGAAAAGTGCCTATGGGTTCCGAAAACATTGAGGATCGAAGACCTAGGGGAAGCAGCGAAAAGATCTATATGGACAACTCTTGGGATTAAAAGTAATGAAACAGACTTCATTCAAAGGGAAGGAATCTTCAAAGCATTTCCATCAAAGGTTGATGAAAAAGACCATGTAGTGCCGAACTCACAAGTCTTGCAGGCCAATCCAGCAGCTTTGTCTAGGTCAATCAACTTTCATGAGACCTCATAA 1512 0.4696 MSEPKDPAIKLFGKTIPVPEMPAASGDSTGAPATSSGDFVGDGADQNRASSTNSSNANNKGEEESDIDQDTLAEKLTEDNNEDGAPTQSSEEVTNLDTASRSGEESVTLSTEKEATSLKTSRTEEKGENSQEKMLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCRNCQRYWTAGGAMRNVPVGAGRRKNKNCASHHRQITVPEAALQNPQSDLPNGIQHPSLNCNSAVLKFGTDTRLCESMASVLDLADKTVNNGTSNGLNRPEELRIPVPYAGGENGNDHLNRSSVTSTQPVEGATINKSQEQVVQNFPGLPSQAPYFPGAPWPFPWNPAQWSSPVPPPAFFPPAFTVPFYTAPAYWGCTVPGTWNIPWIAQPSSPNSTAPNSGPNSPTLGKHSREENSVKSNDAAGGDEQSKETNKEKCLWVPKTLRIEDLGEAAKRSIWTTLGIKSNETDFIQREGIFKAFPSKVDEKDHVVPNSQVLQANPAALSRSINFHETS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2472 503 MobiDBLite consensus disorder prediction 378 399 - -
Dod02g2472 503 Pfam Dof domain, zinc finger 139 196 IPR003851 GO:0003677|GO:0006355
Dod02g2472 503 PANTHER CYCLIC DOF FACTOR 2 1 502 IPR045174 GO:0003700|GO:0006355
Dod02g2472 503 MobiDBLite consensus disorder prediction 400 423 - -
Dod02g2472 503 MobiDBLite consensus disorder prediction 45 60 - -
Dod02g2472 503 MobiDBLite consensus disorder prediction 284 299 - -
Dod02g2472 503 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 502 - -
Dod02g2472 503 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
Dod02g2472 503 MobiDBLite consensus disorder prediction 117 137 - -
Dod02g2472 503 MobiDBLite consensus disorder prediction 1 137 - -
Dod02g2472 503 MobiDBLite consensus disorder prediction 61 81 - -
Dod02g2472 503 MobiDBLite consensus disorder prediction 259 299 - -
Dod02g2472 503 MobiDBLite consensus disorder prediction 378 423 - -
Dod02g2472 503 MobiDBLite consensus disorder prediction 82 116 - -
Dod02g2472 503 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2472 Dod-Chr2 54521737 54525306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2472 6 503 C2C2-Dof Transcription Factor Family AT5G39660 43.130 4.21e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod02g2472 zf-Dof 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2472 - - gmx:100788247 709.909