Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1780 ATGGGTAGGGGGAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGCCAAGTGACGTTTGCAAAGAGAAGGAATGGTTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGGAAGCTCTATGAGTTCTGCAGCAGCTCGAGCATGGCCAACACGCTTGAACGATATCAAAAATGCAGTTATGGGGCCTTGGAAGTCCAACACCAACCTGCAATGGAGACACAGAGGCGCTATCAAGAGTATCTCAAGATGAAATCAAAAGTTGAGGCACTACAGAAGACGCAAAGAAATCTCCTTGGGGAAGAATTGGAGAACTTAGATGTCAAGGATCTTGAGCAGCTTGAACGACAGCTGGAGTCTTCACTAAAGCAAATCAGGTCTAACAAGACCCAGCTTTTGCTTGATCAACTAGCTGATTTGCAAAGAAAGGAGGAGATGCTATTGGACACTAACAATGCCCTCAAGAGCAAGTTAGAGGAAATTAATATGGGACTTCAACCACCTTGGGAAGCTAGGGACCAAACTACTTCCTGCAGCCATCACCCTCCCCGATCAGAGACAGAGGGATACTATGGGACAACACATTGCAACAGCACATTACAAATTGGCTATGGTTCTTCAATGACAAATGAAGCTGTTAGTGTTGCAGGAACCTCAACCCATAATGTCAATGAATTCATGCATGGATGGATGGCATGA 741 0.4561 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMANTLERYQKCSYGALEVQHQPAMETQRRYQEYLKMKSKVEALQKTQRNLLGEELENLDVKDLEQLERQLESSLKQIRSNKTQLLLDQLADLQRKEEMLLDTNNALKSKLEEINMGLQPPWEARDQTTSCSHHPPRSETEGYYGTTHCNSTLQIGYGSSMTNEAVSVAGTSTHNVNEFMHGWMA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1780 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod02g1780 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Dod02g1780 246 Coils Coil 151 174 - -
Dod02g1780 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 229 - -
Dod02g1780 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dod02g1780 246 PANTHER MADS BOX PROTEIN 1 229 - -
Dod02g1780 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod02g1780 246 MobiDBLite consensus disorder prediction 183 197 - -
Dod02g1780 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod02g1780 246 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod02g1780 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod02g1780 246 MobiDBLite consensus disorder prediction 183 206 - -
Dod02g1780 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod02g1780 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod02g1780 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod02g1780 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod02g1780 246 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Dod02g1780 246 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1780 Dod-Chr2 22987325 23001675 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod02g1780 K-box 1.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1780 02 22987325 23001675 Dod02g1780 02 22987325 23001675 ECH
Dod02g1780 02 22987325 23001675 Dod01g0267 01 5026434 5032741 ECH