Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0750 ATGATCCTTTCAGATCCTGAAGGAAGGAGAGAAGAGATGAACACGGCAGTTACCAGAAAGGACATGGATCGGATCAAGGGCCCATGGAGCCCGGAAGAGGACGGGGCACTTCAGAAGCTGGTGGAGAAGCACGGGCCCAGGAACTGGTCCCTGATCAGCAAATCAATCCCGGGCCGGTCCGGCAAGTCCTGCAGGCTCCGCTGGTGCAACCAGCTGTGCCCGCAGGTTGAGCACCGGGCCTTCACGCCCGAAGAGGACGACACCATAATCAGGGCCCACGCCCGCTTCGGGAACAAGTGGGCCACAATAGCCCGCCTCCTCTCGGGCCGAACCGACAACGCCATCAAGAACCACTGGAACTCAACCCTGAAGCGCAAGTGTGCATCCATGACCATCGACGAGCCACTCGTGGCTCAGCCGCTCAAGCGCTCAGTGAGTGCCGGCGCCGCCGTACCCGTCTCCACGGGGCTCTACATGAATCCTCCCACACCGGGTAGCCCCTCCGGATCCGACGTGAGCGAGTCCAGCGTGCCCGTTGCGTCCACCTCACACGTGTACAGGCCCGTGCCGAGAACCGGCGCGGTTCTACCACCCGTAGAAACGACGTCGTCTTCCAATGACCCTCCAACTTCATTGTCCCTCTCACTCCCCGGCGTGGACTCCTCGGAAGTCTCGAATCGGGTGAACGAGCCGGCTCAGGCTGCGTTGCCGTTGAATGCTATACCTTTGATGCCAGCAATGGCGACGGCGGCGCCGGTCGTGGCTCCGATTGCTGTGCAGCCGCTGCAGCAGGTTCATGATTCGTTATCGGCGGCGAAACAGAAAGGGGCTGCGGCGCCGGCGGTGCCGTTCAACTTCAGCGCGGAGTTGCTGGCGGTGATGCAAGAGATGATAAGGACGGAGGTGAGGAGTTATATGGCGGGGTTGGAGCAGCAGAGTAATGGGATGTGTTTTCAGGCTGCTGATGATGGGTTCAGGAACGCTTCTGTGAAGCGTATTGGGATTAGCAGGATCGATTCGTAA 1023 0.6031 MILSDPEGRREEMNTAVTRKDMDRIKGPWSPEEDGALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLCPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMTIDEPLVAQPLKRSVSAGAAVPVSTGLYMNPPTPGSPSGSDVSESSVPVASTSHVYRPVPRTGAVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRVNEPAQAALPLNAIPLMPAMATAAPVVAPIAVQPLQQVHDSLSAAKQKGAAAPAVPFNFSAELLAVMQEMIRTEVRSYMAGLEQQSNGMCFQAADDGFRNASVKRIGISRIDS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0750 340 Gene3D - 25 77 - -
Dod02g0750 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 76 IPR017930 -
Dod02g0750 340 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
Dod02g0750 340 ProSiteProfiles Myb-like domain profile. 21 72 IPR001005 -
Dod02g0750 340 MobiDBLite consensus disorder prediction 159 182 - -
Dod02g0750 340 PANTHER MYB PROTEIN-RELATED 16 308 - -
Dod02g0750 340 CDD SANT 80 123 IPR001005 -
Dod02g0750 340 Gene3D - 79 144 - -
Dod02g0750 340 Pfam Myb-like DNA-binding domain 29 86 - -
Dod02g0750 340 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Dod02g0750 340 SMART sant 77 125 IPR001005 -
Dod02g0750 340 SMART sant 25 74 IPR001005 -
Dod02g0750 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 127 IPR017930 -
Dod02g0750 340 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 16 308 - -
Dod02g0750 340 MobiDBLite consensus disorder prediction 197 224 - -
Dod02g0750 340 MobiDBLite consensus disorder prediction 1 32 - -
Dod02g0750 340 MobiDBLite consensus disorder prediction 158 224 - -
Dod02g0750 340 CDD SANT 28 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0750 Dod-Chr2 9727186 9728208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0750 18 339 MYB Transcription Factor Family AT4G37260 52.738 1.93e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g0750 Myb_DNA-bind_6 1.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0750 02 9727186 9728208 Dod05g1111 05 31165847 31168104 ECH
Dod08g2033 08 47631129 47632268 Dod02g0750 02 9727186 9728208 ECH
Dod02g0750 02 9727186 9728208 Dod02g0750 02 9727186 9728208 ECH
Dod05g1111 05 31165847 31168104 Dod02g0750 02 9727186 9728208 PCT