LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g0746	ATGCAGCAACAACAACAAAAAACATCTCTTCCCTCATCGTATCCTCTGAACACCACCAACTCCAACATGCCCCTCACAGAAGAACACCACGTTCCCCCTTTCTTCGATGCACTCCTCTGTGAAGAACAACAACACACCTTCGACGACTCTGACTCTGGAGATACACACAGCAATAACTGCGACCCAACTCTCGTAAATCCTCCTTCCATTTTGGTGGACAACAATGACGTGTTCTGGGAACACGACGACATCCTCTCTCTAACCTCAAAAGAGACAGTCACACACGCCCATTTCTGTTCCGACACCACCCTCTTCGAGGGTCGTCGCTACGACGCCGTTCGCTGGATTCGTAGAGTTTGCGCTTTCTACGGCTTCGCTGCTTTGACCACTGTTCTCGCTGTTAACTACTTCGACAGGTTCATGACGACCCTAAGGTTTCAGAAGGATAAGCCATGGATGACTCAGCTCACTGCAGTTGCGTCTCTGTCTCTTGCTGCAAAAATGGAAGAGATCCACGTGCCACCTCTTTTAGAGCTCCAAGTCGAGGAACCCAAGTTCGTGTTTGAAGCTAAAACTATTCAGAGGATGGAGCTTCTAGTGTTGTCCAATCTTGATTGGAGGATGAGCCCCGTCACCCCAATTTCCTTCTTTGAACACATTGTCAGAAGGCTTGGTTTGAAGACCCCTTTGCATTGGGAGTTCTTGTGGAGGTGCGAAAGAGTTCTTCTTTGTCTCGTTGCTGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCCACAATGATCCATGTTATTAAAGAGATTGAACCATTTAATGCAACAGAATACATAAATCAACTTATGGATTTACTCAAAAGTAGTGAGGAACAAGTGAATGAGTGCTACAAACTCATACTGAAACTATTGGTTTTGAATGAAGGGATTTACAATCTTTGCCGGAAACGCAAACAGCTATGTGAAGAACCGGGTAGCCCAGGTGGTGTCATTGATGCATCTTTCAGTTCTGACAGCTCAAATGGTTCATCGACAGTGGCATCATCAGCCTCACTTTCACCAGAACCATTGTTCAAACGGAGCAAAGCTCAGGACCCGCAGATGCGACTGGCTTCAGTAGATCGCGTGTCTATTGATGTTCTAAATAGTCCTCATTAA	1161	0.4599	MQQQQQKTSLPSSYPLNTTNSNMPLTEEHHVPPFFDALLCEEQQHTFDDSDSGDTHSNNCDPTLVNPPSILVDNNDVFWEHDDILSLTSKETVTHAHFCSDTTLFEGRRYDAVRWIRRVCAFYGFAALTTVLAVNYFDRFMTTLRFQKDKPWMTQLTAVASLSLAAKMEEIHVPPLLELQVEEPKFVFEAKTIQRMELLVLSNLDWRMSPVTPISFFEHIVRRLGLKTPLHWEFLWRCERVLLCLVADSRVMSYLPSTLAAATMIHVIKEIEPFNATEYINQLMDLLKSSEEQVNECYKLILKLLVLNEGIYNLCRKRKQLCEEPGSPGGVIDASFSSDSSNGSSTVASSASLSPEPLFKRSKAQDPQMRLASVDRVSIDVLNSPH*	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g0746	386	Gene3D	-	98	209	-	-
	Dod02g0746	386	MobiDBLite	consensus disorder prediction	333	371	-	-
	Dod02g0746	386	Pfam	Cyclin, N-terminal domain	93	209	IPR006671	-
	Dod02g0746	386	CDD	CYCLIN	109	201	IPR013763	-
	Dod02g0746	386	SUPERFAMILY	Cyclin-like	82	208	IPR036915	-
	Dod02g0746	386	SMART	Cyclin_C_2	211	340	IPR004367	-
	Dod02g0746	386	MobiDBLite	consensus disorder prediction	333	356	-	-
	Dod02g0746	386	Pfam	Cyclin, C-terminal domain	211	305	IPR004367	-
	Dod02g0746	386	MobiDBLite	consensus disorder prediction	1	26	-	-
	Dod02g0746	386	PANTHER	CYCLIN-D3-2	34	370	-	-
	Dod02g0746	386	MobiDBLite	consensus disorder prediction	1	27	-	-
	Dod02g0746	386	SUPERFAMILY	Cyclin-like	193	306	IPR036915	-
	Dod02g0746	386	PANTHER	CYCLINS	34	370	IPR039361	-
	Dod02g0746	386	Gene3D	-	210	299	-	-
	Dod02g0746	386	SMART	cyclin_7	114	202	IPR013763	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g0746	Dod-Chr2	9690510	9692355	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g0746	76	376	Core Cell Cycle Gene Families	AT5G67260	51.948	4.57e-97	293

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod02g0746	02	9690510	9692355	Dod05g1107	05	30891358	30893411	ECH
	Dod08g2041	08	47772830	47775145	Dod02g0746	02	9690510	9692355	ECH
	Dod08g2037	08	47710840	47713134	Dod02g0746	02	9690510	9692355	ECH
	Dod02g0746	02	9690510	9692355	Dod02g0746	02	9690510	9692355	ECH
	Dod02g0746	02	9690510	9692355	Dod06g0079	06	1055209	1057671	PCT
	Dod05g1107	05	30891358	30893411	Dod02g0746	02	9690510	9692355	PCT