Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3649 ATGGAAGGGATAGCTCCCAATTCATGCACAAGGCCAGTGTTGGAGAAGAAGGCAAGGCCACAAGAGCAATTGAACTGTCCAAGGTGCAATTCAACCAACACCAAGTTCTGTTATTACAACAACTATAGCCTCACACAGCCCAGATACTTCTGCAAGACTTGCAGAAGGTATTGGACAGAAGGTGGCTCTCTCAGAAACGTCCCAGTTGGTGGTGGTTCCAGGAAGAACAAGAAGATCATCTCCGCTTCATCATCTTCATCACCAGCTTCCTCAAAGATTCCAGTTCCAGACTTGAACCCGCCAAGCCTCTCCCAAAACCCTAAAATGCAAGGAGGCCATGATCTCAATTTGGCTTTCCCAGCTATGGAGAAGTATCATGGCATGTCCCCATATGTTGAGATGCCCAAAATTGAAATCGGTGATGCCATTTCTTCTGCTCCAAGTTCTCTTTCAGCAGTTGAGCTACTAAGGTCTGGCATGGCTCCTAGGGGTTTGAATCCTTATGTTCATTCCTTGATGCCAAGCTCAAATGCCCTTTATTCACCTGGGTTTCCCATGCATGAAATTAAACCAAACATTGGCTTTTCAGTTGACGGTCTTGATCAAAATAGATCATCATATGGGGTCCAAGAGAATGGGAGGCTTTTGTTCCCTTTTGGAGAAATGAAGCAGCTTTCTGCAGGTCATGTTGAAGTGGAACAAAATAAAGAGCAAGGAAATTCAACCGGGTATTGGACTGGAATGATTGGTGAAGGGTCATCATGGTAA 768 0.4505 MEGIAPNSCTRPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIISASSSSSPASSKIPVPDLNPPSLSQNPKMQGGHDLNLAFPAMEKYHGMSPYVEMPKIEIGDAISSAPSSLSAVELLRSGMAPRGLNPYVHSLMPSSNALYSPGFPMHEIKPNIGFSVDGLDQNRSSYGVQENGRLLFPFGEMKQLSAGHVEVEQNKEQGNSTGYWTGMIGEGSSW* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3649 255 MobiDBLite consensus disorder prediction 77 106 - -
Dod01g3649 255 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Dod01g3649 255 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Dod01g3649 255 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 250 IPR045174 GO:0003700|GO:0006355
Dod01g3649 255 MobiDBLite consensus disorder prediction 68 106 - -
Dod01g3649 255 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Dod01g3649 255 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 12 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3649 Dod-Chr1 77895450 77897445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3649 16 255 C2C2-Dof Transcription Factor Family AT3G61850 52.045 2.71e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod01g3649 zf-Dof 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3649 - - pvu:PHAVU_006G114900g 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3649 01 77895450 77897445 Dod07g2087 07 52020802 52022052 PCT