Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2027 ATGTCTGAGACTGAGAAGGATCATGGTATCATGCTATTTGGCAGGAAGATTCCATTGCCTGAATGTCAGATTCCAGCCAACTCTGGAGCCAAGGATGCTTGTGGTAGCTTAAAGAAAACAGAAGCAGAAACACCATGTGCAGAAAACTCTGAGCAACAAGAGAATTCTTCTGATTTAAGGGAGGGTAAACAAGGCTCCAAAAACAATGTGCAGGAAAATGAGGCAATAGTAAATTCCAAGCCTGTGGAAGATAACACTGAGATTAGTAGTACTGATCAAGATAAAATCTTGAAGAAACCAGACAAGATTCTTCAGTGTCCAAGATGCAACAGTTTGGACACCAAGTTTTGCTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACCGCTGGAGGAACGATGAGGAACGTTCCGGTTGGTGCTGGGAGGCGGAAGCATAAGCACCTAGCCTCGCAATACCGGCACATTATAGTAACCTCTGGTGGAGTTCCAACCTCTAGGCTAGAAACCACAGACTCATCTGGTCACCAACATATCTCATGCCTTGAACCCTCAGCTGCTTTAACCTCTTCAACAGATAATGGGACTGTATTGAAATTTGGTCCAGACACCCCTTTGTGTGAATCAATGGAATCAATGCTTAATCTTAGGGACCAGAAAATATGTGTTGATGCAAGTTCTATCAATGGTGCAGAATATGGAGATGAATCATCATCCTTATGTGGATCATCTGTGACCAATGTTAGTACTCAATTAAATGAATCATCAGAGCACAACACAACAAATTGGCTGAACTGTTATCCTGTTCCTCCTTGGGTTTTGCCTTGGAATCCAGCAGGTTGGAACAATGTTGGTTCAATGCCATCAGTTCACCAGCCTTCAGCAGGCATGTGTAGGAGTCCATATGGCATTACTGGTCCAAATCCAATGCAGTGGTGCCCAACACCAATGGTGGCAATTCCAGGCATTTGTCCACCACCAAGCACCCCTGTGCAATTTGTTCCACCACCATACTGGAGTGGAACACCAATGTGGGGTTCTGGAACTGGGGCAGTTTCAATAGGATCCAATCCTTGCCTTTCACCTTCTTCATCCACCAGTAACAGCTGCTGCTCAGGCAATGGTTCCCCAACTCTTGGCAAACACGCTAGAGATCCACTTTTCACTGATGAAGACAAGTCAGATAAGTGTGTTTTGATTCCAAAGGCCCCTAGAATTGATGCCCCAAATGAGGCCTCAAAATGTCCTATTTGGGCTACATTAGCCACCATGCATGATAAGAAGCATTGTGTATCAAATGGTGACATTTTGACAAAAATAGGATCCAAGGGAGAAGGCAAAGACATTGTGTTGGATGTGTCTCAAATCATGGAAGCCAACCCAGCAGCTATTTCTCATGCTCATACATTCCAGGAGAGCATATAA 1455 0.4412 MSETEKDHGIMLFGRKIPLPECQIPANSGAKDACGSLKKTEAETPCAENSEQQENSSDLREGKQGSKNNVQENEAIVNSKPVEDNTEISSTDQDKILKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKHLASQYRHIIVTSGGVPTSRLETTDSSGHQHISCLEPSAALTSSTDNGTVLKFGPDTPLCESMESMLNLRDQKICVDASSINGAEYGDESSSLCGSSVTNVSTQLNESSEHNTTNWLNCYPVPPWVLPWNPAGWNNVGSMPSVHQPSAGMCRSPYGITGPNPMQWCPTPMVAIPGICPPPSTPVQFVPPPYWSGTPMWGSGTGAVSIGSNPCLSPSSSTSNSCCSGNGSPTLGKHARDPLFTDEDKSDKCVLIPKAPRIDAPNEASKCPIWATLATMHDKKHCVSNGDILTKIGSKGEGKDIVLDVSQIMEANPAAISHAHTFQESI* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2027 484 PANTHER CYCLIC DOF FACTOR 2 1 483 IPR045174 GO:0003700|GO:0006355
Dod01g2027 484 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 483 - -
Dod01g2027 484 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Dod01g2027 484 MobiDBLite consensus disorder prediction 41 93 - -
Dod01g2027 484 MobiDBLite consensus disorder prediction 68 86 - -
Dod01g2027 484 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
Dod01g2027 484 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2027 Dod-Chr1 56174766 56177487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2027 7 483 C2C2-Dof Transcription Factor Family AT5G39660 31.387 4.99e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod01g2027 zf-Dof 3.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2027 - - gmx:100813787 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2027 01 56174766 56177487 Dod01g2027 01 56174766 56177487 ECH