Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1347 ATGGATTCTTCCCACTATTCTCTCCCAAAAAAATTAAACCCGTCAACCTTTACAAAAGAGAAAGCTCCAATAACCATGGTTTATACTTCCATCCCAGCTTATATTGATCCAGCCAACTGGCAGCAACAGCAACAAAATCATCAACAAGGCAACACAGGTGCCACAAGCTCCCAACTTCTACATCCTCCATCATCTCTTCTGCCGTCGGCTCAGCCTCATGGAACTGGTAGCACCGGCTCCATCAGGCCAGGTTCGATGGCAGACATGGCCAGGATGGCCAACATACCTATGCAAGAACCAGCACAAAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTTTGCTACTTCAACAATTACAATCTCTCTCAGCCCCGCCACTTCTGCAAGACCTGCAAGAGGTACTGGACCCGAGGTGGTGCCTTGAGAAACGTCCCAGTCGGCGGAGGCTGCCGGAGGAACAAGAGGAGCAAAGGTAGCAGCAGTTCCAAGTCTTCGGCGGGCTCAGATCGTCAAACTGCGAGTGCTGGTCCCACCAACTCCGCCTCTTTCAGCGGCGGCTCTGCTGCTGACGTGGTAGGCCTTGGCCCCATGGTGCCACCATCGCTGAGGTTCATGGCTCCATTGCAGCATCAACTTGGTGACCACTTTGCAAGTGGTGGAGAGATAGGCGTAAACTATGGAATGAACTATAGCGCAATTTCCGGTCCAATGGGAGGAATAGGCGACTTGAATTTTCACATGGGAAGTGATTTGGGTGGAGCTAGTGGCAGTAACGCCGGTTCTAGTTTATCTTCTGCTGGATTGGAACGATGGAGGGTTCCACAAACACAGCAATTTCCCTTCTTGGCAGGTTTGGAAACTTCATCACATGGGTTTTACCCGTTTGAAAACAGTACTAATGAGGCACCGGGATATGGCGGTTCTGGTGGTGGTGGCGTCCGGCCGAAGGTGTCATCCTCTGGGGTGATATCTCAATTGGCTTCAGTGAAGATGGAAGAAAATACTCAGGAGCTTAATTTGTCAAGGCAATTTTTGGGAATGAATAATTCTACTAGTGAGCAATATTGGAGTACCGGTACAACAGCAGCTTGGACAGATCTTTCTGGCTTTAGTTCTTCTTCCACTATTACTAGTAATCCACTATAG 1149 0.49 MDSSHYSLPKKLNPSTFTKEKAPITMVYTSIPAYIDPANWQQQQQNHQQGNTGATSSQLLHPPSSLLPSAQPHGTGSTGSIRPGSMADMARMANIPMQEPAQKCPRCESTNTKFCYFNNYNLSQPRHFCKTCKRYWTRGGALRNVPVGGGCRRNKRSKGSSSSKSSAGSDRQTASAGPTNSASFSGGSAADVVGLGPMVPPSLRFMAPLQHQLGDHFASGGEIGVNYGMNYSAISGPMGGIGDLNFHMGSDLGGASGSNAGSSLSSAGLERWRVPQTQQFPFLAGLETSSHGFYPFENSTNEAPGYGGSGGGGVRPKVSSSGVISQLASVKMEENTQELNLSRQFLGMNNSTSEQYWSTGTTAAWTDLSGFSSSSTITSNPL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1347 382 MobiDBLite consensus disorder prediction 40 82 - -
Dod01g1347 382 ProSitePatterns Zinc finger Dof-type signature. 104 140 IPR003851 GO:0003677|GO:0006355
Dod01g1347 382 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 30 377 - -
Dod01g1347 382 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 377 IPR045174 GO:0003700|GO:0006355
Dod01g1347 382 MobiDBLite consensus disorder prediction 160 186 - -
Dod01g1347 382 ProSiteProfiles Zinc finger Dof-type profile. 102 156 IPR003851 GO:0003677|GO:0006355
Dod01g1347 382 Pfam Dof domain, zinc finger 101 156 IPR003851 GO:0003677|GO:0006355
Dod01g1347 382 MobiDBLite consensus disorder prediction 40 85 - -
Dod01g1347 382 MobiDBLite consensus disorder prediction 146 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1347 Dod-Chr1 28779055 28780679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1347 68 376 C2C2-Dof Transcription Factor Family AT3G55370 40.549 7.73e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod01g1347 zf-Dof 8.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1347 - - gmx:100796820 380.948