Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0267 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAATAAGATAAACAGGCAGGTGACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGAGGCAAGCTTTATGAGTTCTGTAGCAGCCCTAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGTTATGGTGCTGTGGAAGTTAACAAGCCTGCCAAAGAGCTTGAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAGTCTCTTCAAAGGACCCAGAGAAACCTTTTAGGGGAAGACTTAGGCCCACTTAACACCAAGGATCTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTGAAGCAAGTGAGATCCACAAAGACACAGTTTATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTGGATGTAAACAGAACCCTGACCATGAAGCTGGAAGAAATCAATTCAAGAAACCAATATAGGCAACCATGGGAAGCTGGTGATCAAAGCATGCCATATGGTGGTCCACAGAATCCTCACTCCCAGGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGTCCTGACTACAGGTACAATGCTGCTGTAGCTTCAGATCAGATAACTGCCACAACTACTCAAGCTCAACAAGTCAATGGTTTCATTCCTGGATGGATGCTTTGA 753 0.4582 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVDVNRTLTMKLEEINSRNQYRQPWEAGDQSMPYGGPQNPHSQGFFQPLECNPTLQIGPDYRYNAAVASDQITATTTQAQQVNGFIPGWML* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0267 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod01g0267 250 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 236 - -
Dod01g0267 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod01g0267 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod01g0267 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod01g0267 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod01g0267 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Dod01g0267 250 MobiDBLite consensus disorder prediction 184 206 - -
Dod01g0267 250 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod01g0267 250 Coils Coil 124 144 - -
Dod01g0267 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod01g0267 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod01g0267 250 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Dod01g0267 250 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Dod01g0267 250 PANTHER MADS BOX PROTEIN 1 236 - -
Dod01g0267 250 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0267 Dod-Chr1 5026434 5032741 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod01g0267 K-box 2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0267 01 5026434 5032741 Dod05g1815 05 43648959 43653822 ECH
Dod01g0267 01 5026434 5032741 Dod01g0267 01 5026434 5032741 ECH
Dod02g1780 02 22987325 23001675 Dod01g0267 01 5026434 5032741 ECH
Dod02g2369 02 52018869 52024459 Dod01g0267 01 5026434 5032741 PCT