Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0154 ATGTTGGAAGCAAAGGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGGTGCCGGAGATCTCAATCGGCGCCGGAGACTCTACCGGAGCTCCGGCATCGTCATGTGGTGATGTGGTTGATGACAGTGTTGATCAGAATCACGCATCTTCCGCAAACTCCACGAGCAGCGACATACAAGAGCAAGAAGAGATTGAGAAGAAGGATACATCGAGAGAGAAACCCATTGATGAAAAGAAGGAAGATGAACCCCCTATACAATCATCAAAAGAGTTCACCAATCCAGATACAGCCTCTAGGACAGGCGAAGAATCTGTCACCCTACCCACTGAGAAGGAGGCTACAACATTGAAGACTTCAAAGACTGAAGAAGAACAGGCTGAGACAGGTAATTCACAAGATAAGACCCTCAAAAAACCAGACAAAATACTGCCTTGTCCCCGCTGTAATAGTATGGACACCAAGTTCTGCTACTACAATAACTATAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATATTGGACTGCTGGTGGAACCATGAGGAATGTGCCCATAGGTGCCGGTCGCAGGAAGAACAAGAACTCTTCTTCTCACTATCGTCAGATAACTGTCTCTGAAGCAGCACTTCAAAACACTCGGAAAGGTTTGCCAAATGGAGTCCACCATCCTTCCTTGAAGTGCAATGGCACAGTCCTTACATTTGGGTCGGATGCACCCTTGTGTGAATCAATGGCATCTGTCTTGAACCTTTCTGATAAATCAGTGCACAATTACCTAAGGAATGGATTTCAGAAACCTGAAGAACTAAGGATTCCTGTTACCTATGCCAGTGGAGAAAAAGGTGATGATCAGTCCAGCAAATCATCTGTTAGCTCCACAAGGTCTATGGAAGGCACAAGCGTCAATAGTCCCCAAGAACAAACTATTCCAAATGGTCAGAGCTTCCCACCACAAATTCCCTACTATCCTGGGCCCCCTTGGTCTTTCCCATGGAATCCAGCACAGTGTAACTCTTCAGTACCACCACCTGCTTTTTGCCCACCAGGATTTGCCATGCCATTTTATCCTGCAACAGCTTATTGGGGTTGTACCGTATCAGGTGCATGGAACATGCCGTGGCTAGCACAACCATCATCACCAAATGCTGCAGCCACTAACTCCAGCGCTCCCAACTCCCCAACACTGGGCAAACATTCAAGGGAAGAAAACATGTTTAAACCAAAAGACACGGGCGGTGAGGATGGAGATGAACATAACAAAGAGGATAACAAAGAAAAGTCCCTTTGGGTTCCCGAAAACATTGAGGATTGA 1323 0.4694 MLEAKDPAIKLFGKTIPVPEISIGAGDSTGAPASSCGDVVDDSVDQNHASSANSTSSDIQEQEEIEKKDTSREKPIDEKKEDEPPIQSSKEFTNPDTASRTGEESVTLPTEKEATTLKTSKTEEEQAETGNSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKNSSSHYRQITVSEAALQNTRKGLPNGVHHPSLKCNGTVLTFGSDAPLCESMASVLNLSDKSVHNYLRNGFQKPEELRIPVTYASGEKGDDQSSKSSVSSTRSMEGTSVNSPQEQTIPNGQSFPPQIPYYPGPPWSFPWNPAQCNSSVPPPAFCPPGFAMPFYPATAYWGCTVSGAWNMPWLAQPSSPNAAATNSSAPNSPTLGKHSREENMFKPKDTGGEDGDEHNKEDNKEKSLWVPENIED* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0154 440 MobiDBLite consensus disorder prediction 382 440 - -
Dod01g0154 440 MobiDBLite consensus disorder prediction 279 321 - -
Dod01g0154 440 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Dod01g0154 440 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Dod01g0154 440 MobiDBLite consensus disorder prediction 403 440 - -
Dod01g0154 440 MobiDBLite consensus disorder prediction 283 319 - -
Dod01g0154 440 MobiDBLite consensus disorder prediction 40 59 - -
Dod01g0154 440 MobiDBLite consensus disorder prediction 1 141 - -
Dod01g0154 440 MobiDBLite consensus disorder prediction 60 87 - -
Dod01g0154 440 MobiDBLite consensus disorder prediction 88 115 - -
Dod01g0154 440 Pfam Dof domain, zinc finger 141 198 IPR003851 GO:0003677|GO:0006355
Dod01g0154 440 PANTHER CYCLIC DOF FACTOR 2 1 436 IPR045174 GO:0003700|GO:0006355
Dod01g0154 440 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 436 - -
Dod01g0154 440 MobiDBLite consensus disorder prediction 116 141 - -
Dod01g0154 440 Coils Coil 435 440 - -
Dod01g0154 440 MobiDBLite consensus disorder prediction 382 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0154 Dod-Chr1 2721301 2724536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0154 6 438 C2C2-Dof Transcription Factor Family AT5G39660 41.150 1.99e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod01g0154 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0154 - - aprc:113862693 678.322