Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1048 ATGTCACAGGAAAATAATCCTCCTTCAAAGCCGGCAGCCTCGAAAGACGACGGTGTCCAAGGCTCCGGCTGCCGGAAAACTGCCTCCGCGAGGCCACCAGAACAAGGCCTCAAGTGTCCAAGATGTGACTCGCCCAACACCAAATTCTGTTACTACAACAATTACAGTTTGACGCAGCCAAGGCATTTCTGCAAGACGTGCCGGAGGTACTGGACAAAGGGCGGAGCCTTACGCAACGTCCCCATTGGCGGTGGCTGCCGGAAGAACAAGAAGGTGAAGTCGTCGTCGTCGTCTTCTTCAAGGCTCTCCAGCGACTCCAAGGACTCCGGCTTCCCTTCGGAGCTTGGAAGCTTCAAGTTCTTCCACGGCCTTTCCCCCTCCCTAGATTTTCATCTTGGTGGGACGTCCTTACCCTTCCCTAGACTTCACCATCATCAGCCCCCCACCATATACAACCAAATCTCTTCCTTTGGGGATGTTCAAGCAGCCACCTTTGATCCATCTGGAAGCTCAAATTCTATGCTTGATTTCAATTACCCATCAACAGGAGGAGGTTTCAGTGGTGTAATTCAGGGTATGAGCTCCATGAGTATGAACGTTAACAGTAGCCTAGCATCTTCAATCGAATCATTGAGTTCGGTGAATCAAGACTTGCACTGGAAACTACAGCAACAGAGGTTAACCATGCTGTTTGGTAGTGATGATAATAGCCAGAAAGATGACGGTGTTTCAGCGGTTTATCTTGAGAACCAAATCCAGAAACCACAACCCATCTTGTTTCAGAATCTTGAGATTTCAAAGCCAGAGATTAATTGCGGGGTTGCTGGTAATTCCAGAAGAGAAGGCCCAACTGCTGGGGATACAACACCTACTGAGTGGTTCTTTGGAAATTCTTTTGCTTCGGTGACTCCTACGCCTACTAGTACCAGTAGTGGTGGGAATAATGGCCATGAAAATGCTAGTAATAACTGGACTTCTATACATGCTTGGAGTGATGTGCAGCAGCAATATAATGCTTTGCCCTAG 1026 0.4834 MSQENNPPSKPAASKDDGVQGSGCRKTASARPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSSSSSRLSSDSKDSGFPSELGSFKFFHGLSPSLDFHLGGTSLPFPRLHHHQPPTIYNQISSFGDVQAATFDPSGSSNSMLDFNYPSTGGGFSGVIQGMSSMSMNVNSSLASSIESLSSVNQDLHWKLQQQRLTMLFGSDDNSQKDDGVSAVYLENQIQKPQPILFQNLEISKPEINCGVAGNSRREGPTAGDTTPTEWFFGNSFASVTPTPTSTSSGGNNGHENASNNWTSIHAWSDVQQQYNALP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1048 341 MobiDBLite consensus disorder prediction 1 37 - -
Dere13g1048 341 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Dere13g1048 341 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Dere13g1048 341 MobiDBLite consensus disorder prediction 82 110 - -
Dere13g1048 341 MobiDBLite consensus disorder prediction 274 293 - -
Dere13g1048 341 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Dere13g1048 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 228 IPR045174 GO:0003700|GO:0006355
Dere13g1048 341 MobiDBLite consensus disorder prediction 90 110 - -
Dere13g1048 341 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1048 Dere-ChrDere13 13855723 13856748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1048 1 341 C2C2-Dof Transcription Factor Family AT5G65590 40.395 9.67e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere13g1048 zf-Dof 1.3e-32 No_clan