Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0563 ATGATCCAAGAACTGTTGGGTGGCTCTTCTGGTTTTATACCAGCAGGAGATAGGAAACTCTCCATTAACACATCAGGAGTTCTAGCACCCACCACACCATCTCCTCCTCTCCCGTCTTCCACCACCACCACCACTTCTACCGCCGGAGGTGCTGCTACAGCCACCTCATCAAATTCAGAAAGCCAAAACTTGAGGTGCCCACGATGCGATTCATCGAACACAAAATTTTGTTACTACAACAACTACAACCTCACCCAGCCTCGCCACTTCTGCAAGACATGTCGCCGGTACTGGACCAAAGGAGGTGCTCTGAGAAACGTTCCGATCGGAGGCGGTTGCCGGAAAAACAAGAGCGTCAGCGTGTCGTCAAACTCTGTGGCGAAGCCGAGCGCAGCGGCGGCTAAGATGAAAACGGTGGCGTCTGAGTTTGGAAGCAGGTCAGGACTTGGTGGTGGTGGGTTCGATCACCAGGAGCTTCCGGCAAGCCCAATTTTGTGGGGCTCGCCTCAAAATTCTCATCTGTTGGCATTGCTGAGGGCTAGCCAGAACCAAAACCCTAACCCTAGCTCTGGTCCTGGTAATCCCATCTCTAATAATGCTGTGACTGTGAAGGGAGAAGGAAACTTGATGGGATCCCATATGGTGACTGAACCCATGGGGTCTAATGGGCATTTGAATGGTCCTCGAAGCGTGGGCTTTGATCCTTCACTTGGTCTCATAAGCTCTTTCTGGAGAAACAACAATCAAGATCAGCCTCAACAACAAAATGGCGGTTTTGTACTTGGTGAACACCAAAATAGTGGGATTCAAGAACTCTACCAGAGGCTCAGGTCATCATCATCTTCAGCTAACTACTTTAGTGACGACTCATCGCCGATGTTTCTGAGCAATATGGCTTCTTCTTCATCTTCATCTTCCTCTTTAGCCATCTTGGAGTCAGCTCCAGTTGGTGGGGGTGAAATTGGATTGGGGTATTGGAATCAGCCCCTTTCCTGGTCTGATCTTCCCACAACTAATGGTGCATATCCGTAA 1032 0.4971 MIQELLGGSSGFIPAGDRKLSINTSGVLAPTTPSPPLPSSTTTTTSTAGGAATATSSNSESQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSVSVSSNSVAKPSAAAAKMKTVASEFGSRSGLGGGGFDHQELPASPILWGSPQNSHLLALLRASQNQNPNPSSGPGNPISNNAVTVKGEGNLMGSHMVTEPMGSNGHLNGPRSVGFDPSLGLISSFWRNNNQDQPQQQNGGFVLGEHQNSGIQELYQRLRSSSSSANYFSDDSSPMFLSNMASSSSSSSSLAILESAPVGGGEIGLGYWNQPLSWSDLPTTNGAYP 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0563 343 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Dere13g0563 343 MobiDBLite consensus disorder prediction 24 64 - -
Dere13g0563 343 Pfam Dof domain, zinc finger 62 118 IPR003851 GO:0003677|GO:0006355
Dere13g0563 343 MobiDBLite consensus disorder prediction 182 230 - -
Dere13g0563 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 54 272 IPR045174 GO:0003700|GO:0006355
Dere13g0563 343 MobiDBLite consensus disorder prediction 38 64 - -
Dere13g0563 343 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
Dere13g0563 343 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0563 Dere-ChrDere13 7064544 7065575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0563 64 140 C2C2-Dof Transcription Factor Family AT5G60200 64.198 2.71e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere13g0563 zf-Dof 1.7e-32 No_clan