Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1456 ATGGAAGATCCAACTGCATTCCAACCCATGAAAGGCCATGGCTTTCCCGATCAAGAGCAGCTTAAATGCCCGCGTTGTGATTCCACGAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCATTTTTGCAAGAATTGCAGGAGGTACTGGACCAAAGGAGGCATTCTCCGCAACATCCCAGTCGGAGGTGGAAGCCGGAAAAACACAAAACGATCGTCCAGTAGCACCAAACGCTCTGCTGCATCATCATCGTCATCTTCTTCTTCTCCGTCGGTCTCGTCGGCCATTACAGAGACAGATCCAACCGGGGTTTACACCGAGCCGATTGGCGGGAGTTTCAGTTCGCTTCTAGCATCATCTGGGCATTTGGGGAGTCTCTGGGAGGGTGAAGGTTCAAATGGATCGGGTTTGAAAATGGCAGGAATGGGTGAATTTGGCGAGAATGTGAGTTCTGTTCGACGAGTTGCTGATTCGGGTTCGGAGATGCAAAGCAATGGCGATTCAGAGAGGTTTCTGGGTTCACAAAACGGTGATTCTACTTGTTGGAATGGTGACAATGGGTGGTCTAACCTTGCAATGTATACACCTCGCTCGAGCTTTCAGTAG 621 0.5008 MEDPTAFQPMKGHGFPDQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGILRNIPVGGGSRKNTKRSSSSTKRSAASSSSSSSSPSVSSAITETDPTGVYTEPIGGSFSSLLASSGHLGSLWEGEGSNGSGLKMAGMGEFGENVSSVRRVADSGSEMQSNGDSERFLGSQNGDSTCWNGDNGWSNLAMYTPRSSFQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1456 206 MobiDBLite consensus disorder prediction 1 21 - -
Dere12g1456 206 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 146 IPR045174 GO:0003700|GO:0006355
Dere12g1456 206 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Dere12g1456 206 MobiDBLite consensus disorder prediction 159 184 - -
Dere12g1456 206 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Dere12g1456 206 MobiDBLite consensus disorder prediction 65 108 - -
Dere12g1456 206 MobiDBLite consensus disorder prediction 70 106 - -
Dere12g1456 206 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1456 Dere-ChrDere12 26782934 26783554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1456 15 170 C2C2-Dof Transcription Factor Family AT1G51700 51.744 2.79e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere12g1456 zf-Dof 3.8e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1456 12 26782934 26783554 Dere12g1456 12 26782934 26783554 ECH
Dere12g1456 12 26782934 26783554 Dere11g1552 11 28379967 28380611 PCT