Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1214 ATGGAAGGGATACCTCCTCAAAATTCATTGACAAAGCCATTACTCATAGAGAAGAAGGCAAGGCCACAAGAGCAATTGAACTGTCCAAGGTGCAATTCAACCAACACCAAGTTCTGTTATTACAACAACTATAGCCTCACACAACCCAGATACTTCTGCAAGACTTGCAGAAGGTACTGGACAGAAGGCGGGTCCCTCAGAAACATCCCTGTTGGAGGAGGCTCTAGAAAGAACAAGAGTAAGGTCATCACTTCCTCTTCTTCTTCAACCTCATCATCAAAGGTTCTTGACCTAAACCCGCCATTATCGAGCCTCTCATCAGGGTTGAAGGATCCAAATCTGAATCCCTCTCGAAGTCAAATTAACCAAAGCTTCTCAACTATTTCCACCCATCAAAATCCTAAAATCCAAGGAGGACAAGATCTTAATCTGGCTTTCCCAACTTCTTCTCTTTCAGCTCCTAGGGTTTTGAATAATAATATACCTTATGTTCCTTCGTTGATGATGCCAAATAGCTCATATAGTAACCTTAGTTATCCATCTGGCTTCATTCCCTTGCAAGAAGAAACTAAACCTAGCCTGGGCTTTTCAGTGGATGGGCTTGGAAATAGATCATATGGAGTCCAGGAGAATGATAATGGTGGTGGGAGGCTTTTGCTACCTTTTGGAGGAGTCAAGCAGCTTTCTGCTGGAACTGAAGTGGAGCAAAATAATAAAGAACAAGGGAATTCAAGTGGGTTTTGGACTGGAATGATTGGTGAAGGATCATGGTAA 774 0.4264 MEGIPPQNSLTKPLLIEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKSKVITSSSSSTSSSKVLDLNPPLSSLSSGLKDPNLNPSRSQINQSFSTISTHQNPKIQGGQDLNLAFPTSSLSAPRVLNNNIPYVPSLMMPNSSYSNLSYPSGFIPLQEETKPSLGFSVDGLGNRSYGVQENDNGGGRLLLPFGGVKQLSAGTEVEQNNKEQGNSSGFWTGMIGEGSW 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1214 257 MobiDBLite consensus disorder prediction 67 120 - -
Dere11g1214 257 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
Dere11g1214 257 MobiDBLite consensus disorder prediction 235 257 - -
Dere11g1214 257 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Dere11g1214 257 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 172 IPR045174 GO:0003700|GO:0006355
Dere11g1214 257 MobiDBLite consensus disorder prediction 235 251 - -
Dere11g1214 257 MobiDBLite consensus disorder prediction 78 120 - -
Dere11g1214 257 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1214 Dere-ChrDere11 23279043 23279816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1214 18 257 C2C2-Dof Transcription Factor Family AT3G61850 42.491 3.20e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere11g1214 zf-Dof 4.2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1214 11 23279043 23279816 Dere11g1214 11 23279043 23279816 ECH