Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1610 ATGTCGACGTCGACCTCGAGGAGGAGCAAGGGTCGTCAAAAGATTGAGATGAAGAAGATGAGCAACGAGAGCAACCTTCAGGTGACTTTCTCGAAGCGTCGCACTGGTCTTTTCAAGAAGGCCAGTGAGCTTTGCACCCTCTGCGGCGCCGAGGTTGCTCTCATCGTCTTCTCGCCCGGAGAGAAGGTCTTTTCTTTTGGCCACCCTAACGTGGACGCTGTCGTGGATCGCTACCTCATGCGAGCCCCGCCGCCGCAGACCTCCGGCACAATGCAGCTCATCGAGGCTCACCGCAACGCCAACGTCCGCGAGCTCAACGCACAGTTCACCCAAATCTCTGCCCAGCTCGACAGCGAGAAGAAGCACAGTGAGGAGTTGAATCATATGCGAAGGGCCACCCAGGGTCAGTGCTGGTGGGCAACTCCAATAGATGAGATGACAAGGCCACAACTTGAGCTGTTCAAGGGTGCTCTGGAGGAGCTGAAGAGGACTGTGATCAGGCAGGCTGATAGGATGATCCTGTTTCAGAATGCTAGCTCAAATCAGTTTTTTGTCGGCAGTTCCTCTTCCAACGCAGTGGCGCCGCCGCTGCCGCCGCCTCAAGTGTTTCAGTCGCCACCGTCGATAGTTGAGAATCCCCGGTTTCATGGGAGCATAATGCCACCAGACCATGGGTTCAGCAATATGGGAGGATATGGAAGACCAGGGTTTTACTGA 717 0.5537 MSTSTSRRSKGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPGEKVFSFGHPNVDAVVDRYLMRAPPPQTSGTMQLIEAHRNANVRELNAQFTQISAQLDSEKKHSEELNHMRRATQGQCWWATPIDEMTRPQLELFKGALEELKRTVIRQADRMILFQNASSNQFFVGSSSSNAVAPPLPPPQVFQSPPSIVENPRFHGSIMPPDHGFSNMGGYGRPGFY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1610 238 Gene3D - 22 89 IPR036879 GO:0003677|GO:0046983
Dere10g1610 238 FunFam Agamous-like MADS-box protein AGL62 22 88 - -
Dere10g1610 238 PANTHER MADS BOX PROTEIN 12 167 - -
Dere10g1610 238 CDD MADS_MEF2_like 11 79 IPR033896 GO:0000977|GO:0045944
Dere10g1610 238 SUPERFAMILY SRF-like 11 95 IPR036879 GO:0003677|GO:0046983
Dere10g1610 238 Gene3D - 90 182 - -
Dere10g1610 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Dere10g1610 238 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Dere10g1610 238 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Dere10g1610 238 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Dere10g1610 238 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Dere10g1610 238 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1610 Dere-ChrDere10 28560443 28561402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1610 7 192 Type I MADS-box Gene Family AT5G60440 59.574 4.71e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere10g1610 SRF-TF 9.3e-25 No_clan