Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1112 ATGATTAAGCTCTTTGGGACGGTGATTCCATTGCAAGGTACGCAAGTAAAAGATGATCATCAGAAATGCAGTGATGATCAGACGGCGGAGAAGAGGCCAGATAAGATCGTACCATGCCCTAGATGCAAAAGCATGGAGACAAAATTCTGTTACTTCAACAATTACAACGTTAATCAGCCAAGGCATTTCTGTAAGAGCTGCCACCGGTACTGGACGGCCGGAGGGGCACTGCGCAACGTGCCAGTGGGTGCCGGCTGGCGAAAGGCCAAGCCGGCGTGTCGCCGAGTTGGTGAATTCTTGGAGAGTTGCGCGTACGATGCATCTGAATCTGAAGTTCAAGCTCAACAGTTTGGTTTGGTATATCAAGGGTTGGTGGTGGAAGATTACTGGCATGTTTCCATGGCTCAAAGCGATTTTCAGATGCTTTTTGCGGTGAAACGTCCGAAGACAAGCTCGCGAGGTCGACCTAGCTAA 474 0.4958 MIKLFGTVIPLQGTQVKDDHQKCSDDQTAEKRPDKIVPCPRCKSMETKFCYFNNYNVNQPRHFCKSCHRYWTAGGALRNVPVGAGWRKAKPACRRVGEFLESCAYDASESEVQAQQFGLVYQGLVVEDYWHVSMAQSDFQMLFAVKRPKTSSRGRPS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1112 157 PANTHER CYCLIC DOF FACTOR 2 20 94 IPR045174 GO:0003700|GO:0006355
Dere10g1112 157 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Dere10g1112 157 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Dere10g1112 157 Pfam Dof domain, zinc finger 34 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1112 Dere-ChrDere10 20579638 20580111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1112 2 155 C2C2-Dof Transcription Factor Family AT2G34140 50.888 1.20e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere10g1112 zf-Dof 7.4e-32 No_clan