Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0973 ATGTTGGGTAACTGTGAGAAAATGGTAGTCATCCCTCCCAACACTAACGAATGGCCACAGAGGCAGCAGATAGATGATCAAAAGATATCGATGGCTTCTTCTTCCTCCTCCTCAAGGGTAATGGAAAAGCCAAACCAAGAGCTTCTTCAGCAGCAACAAGAAGCCCTCAAGTGCCCTCGCTGTGACTCCTCAAACACCAAGTTCTGTTACTATAACAACTACAGCTTGTCTCAGCCTAGGCACTTCTGCAAAGCCTGCAAACGATACTGGACCCGAGGAGGCACTCTGAGGAATGTTCCTGTGGGAGGAGGGTGCAGGAAAAACAAGCGAATGAAGCGCCCAACAACATCAGATACTCATACTCATACTGCTGCACCTTCTTCTGCACCAGCTCCAACTAGTGCCTCAGCTTCAAACCCTCCTTCGCAACCCCAGATCGATGTCGCTTCCACCTCCAATCACATCAATCCCTTATTCTATGGCATGAATCTTCCATATCCAAGGTTCAATTCTTCCAGTACTGGGTATGATCATCTTCAGTCTCAGATGAATAGTTCCCTTGGATTAGATTTCACTGATAATGGATTCCGAAATGGGTTTTCTTCAAACAACACGCTTCTTTCAAGCTACAACAGCTCCCCCATGTTTGTTAATTCTTCCTCAACATCTACAACCACACCCAGTACTACTACTACTTCTCCTGTTATGGCTTCCCTGCTAAACACAACTCTACAGCAACAAAAGTTTATCAATAGTGGAGTTAACAGTACTTTTCCGGGGTTCGCACGACTAGAAGAGCTGGCAATAGCAGGTAACAGCATTAGCAGTAGTACTCATGATGCAGAGATGGTTGCTTTAAAAGAAGTGAAATCTGTAGTGGAAGGGGAAAACAGGTTTGTGGGGTGGCCAAATAACCAGATCGATCAGCATCATGTGGGCTTGTCCGACCCTTCATCGCTTTATTGGAACGCTGCAACAGCTATGGGTGGTACTGCTTGGAATGATCAGACCAATATTGGCCCTTCAGTCACCTCTCTGATCTGA 1044 0.4598 MLGNCEKMVVIPPNTNEWPQRQQIDDQKISMASSSSSSRVMEKPNQELLQQQQEALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRMKRPTTSDTHTHTAAPSSAPAPTSASASNPPSQPQIDVASTSNHINPLFYGMNLPYPRFNSSSTGYDHLQSQMNSSLGLDFTDNGFRNGFSSNNTLLSSYNSSPMFVNSSSTSTTTPSTTTTSPVMASLLNTTLQQQKFINSGVNSTFPGFARLEELAIAGNSISSSTHDAEMVALKEVKSVVEGENRFVGWPNNQIDQHHVGLSDPSSLYWNAATAMGGTAWNDQTNIGPSVTSLI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0973 347 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 249 IPR045174 GO:0003700|GO:0006355
Dere10g0973 347 MobiDBLite consensus disorder prediction 101 149 - -
Dere10g0973 347 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Dere10g0973 347 MobiDBLite consensus disorder prediction 118 149 - -
Dere10g0973 347 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Dere10g0973 347 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0973 Dere-ChrDere10 18234258 18235529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0973 1 347 C2C2-Dof Transcription Factor Family AT1G28310 37.887 2.55e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere10g0973 zf-Dof 1.3e-33 No_clan