Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0972 ATGGATCAAGAAGATGGTGGAGGAGGAGACATGAATGAACAACCTCAAGCTCAGCCTCAGCCTCAGACTCCACCTCCACAGAGATGCCCTCGTTGCGACTCTGCGAACACCAAGTTCTGCTATTACAATAACTATAGCCTCTCGCAGCCTCGCTACTTCTGCAAAACTTGTAAAAGGTACTGGACCCATGGTGGAACCCTGAGGAACGTCCCCGTCGGAGGTGGTGGCCGCAAGGGAAAGCGCGCCAAAACGTCGACGACGACATCTTCCGCTGAGACTTGCCGGTCGCAGCCGCGGCAAGAGGTGGTCCCTTCGACGACGTCATCTTCACGCGGTGTGGCTGCTCCTGCTCCGGCGACGGTTCCGTCGATAAGTCAGTTCTATCAAGGTGGTGGGTATCTGTCATCTCTGGCGGCGATTCACTCCCTGAATCCTTCGCAGCCGTTCAATCATCTCGGTTCTGATGCTATGGGTTCTTGTCCTTCTTCCCATTTGGGTTTACTTGCTGGGTTCAACGCTGCGTCTCTTTCACAGCGACAGATTCGTCCGTCGTCCCAACTTTTCCAAACTGGAAACAGAGAGAGCGAGGTGGAATCTTTGTATGCAGCAGAACAAGGTCTGATTCAAACGAGCATGATCGGAAATAGCAGTTCTGCTTCTCCCCATGATTGGTCGCAAAGCCATAGAGCCCCTGATGGATCTTTGTGGAGTACTATAAGCACCACTTCCATTGCTGATAATTCTGGAATTAACAATACTGCTAGCGCTGGATCTTCCTCTCTGGTCCCAAATCAATGGCCCAACCTACCAGGGTATGGCCCGCCTCCATGA 831 0.5259 MDQEDGGGGDMNEQPQAQPQPQTPPPQRCPRCDSANTKFCYYNNYSLSQPRYFCKTCKRYWTHGGTLRNVPVGGGGRKGKRAKTSTTTSSAETCRSQPRQEVVPSTTSSSRGVAAPAPATVPSISQFYQGGGYLSSLAAIHSLNPSQPFNHLGSDAMGSCPSSHLGLLAGFNAASLSQRQIRPSSQLFQTGNRESEVESLYAAEQGLIQTSMIGNSSSASPHDWSQSHRAPDGSLWSTISTTSIADNSGINNTASAGSSSLVPNQWPNLPGYGPPP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0972 276 MobiDBLite consensus disorder prediction 70 115 - -
Dere10g0972 276 MobiDBLite consensus disorder prediction 249 276 - -
Dere10g0972 276 MobiDBLite consensus disorder prediction 249 266 - -
Dere10g0972 276 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Dere10g0972 276 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Dere10g0972 276 MobiDBLite consensus disorder prediction 81 114 - -
Dere10g0972 276 Pfam Dof domain, zinc finger 27 81 IPR003851 GO:0003677|GO:0006355
Dere10g0972 276 MobiDBLite consensus disorder prediction 1 30 - -
Dere10g0972 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 192 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0972 Dere-ChrDere10 18194539 18195369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0972 12 159 C2C2-Dof Transcription Factor Family AT4G21050 44.444 4.27e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere10g0972 zf-Dof 2.7e-32 No_clan