Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2240 ATGGATGAAACATGCGAAAGCTGTAGATCACGGATTGACGACATTTACTGGACCCATTTCAAGTTCGTGCATTTTGCCCAGCTTCTCCCTAGTGGTTATGATCAAAACCTTCTAACTGATACACAAGAAGTGAAGTTTCTAATAGAAGTTCTGCATTGGCCTCCTTTGTTAGAGAAAAGAGAGGAAGAGGAAGAACTCCATTACAAGCTACTCAGTTTTCCATGCCTTTCTTCTAATAGACAGAATCCTATTTCTATGCTGACACTTGCATTCCGTTACCTTTATGACCTTGCTGTTAGAGTCTTGAAGGTCATTTTGACCTCTATCATTGAGATGAACTTCTGTGAGAAGGTTGCTTCTTATTTTGTCCTGGAATGCGGGCATACAAGAAAGCGAACTAGAGACAGAGATAACTGTATTGAAGAAGTCAATATCCCTTCTACCATTGGTGTTGAATGTGCTTCACCTGAGAAATGTGTTCATGGTGACGGTAAAAAGACTTGTAATGCTGCTGGGGAATGTACCTCCCCTTTGCAAATTAAACGAAGAGGAAGACCCAAAGGATTTAAAGCACGTGCTGGAAAAGTTAATCAGATACCTGATGCTGAACCTGCATCTGCGGGCAGAAATAGGGATAGAAGGTTTGTCACAGAAGATGTGAAGATGAATGCCCTCGAACTGGCTACAGCAGCATGTACCAAAGATGGTTTCTGCGTAGTGATGCGACCCACACATGTATACAAGAGATTCTATTTGTCATTCCCTAGTAAGTTGATAACAGAACATGCTCCTCCACAATCTGAAGATGTGATATTACGTGTGGGAGAGAGCGAATGGCATGCTAGATACAGCTTTGACCACAGTCGTCGCATTGGAGGACTTACCGGTGGGTGGAAACATTTTGCGCTGGACAATAACCTGCAGGAATATGATGTTTGTGTGTTTGAATCAGAAGGAAAAGGCAAGAAGCCACCGATCTTGGAAGTGAAAATATTCAGAGTTGATGAAGAGTTTGACAAAGCGAACTCTGGAGGAAAACAGGTTAAGAAGAAACTGGTTGAAACCATCCAAGCATAG 1077 0.4225 MDETCESCRSRIDDIYWTHFKFVHFAQLLPSGYDQNLLTDTQEVKFLIEVLHWPPLLEKREEEEELHYKLLSFPCLSSNRQNPISMLTLAFRYLYDLAVRVLKVILTSIIEMNFCEKVASYFVLECGHTRKRTRDRDNCIEEVNIPSTIGVECASPEKCVHGDGKKTCNAAGECTSPLQIKRRGRPKGFKARAGKVNQIPDAEPASAGRNRDRRFVTEDVKMNALELATAACTKDGFCVVMRPTHVYKRFYLSFPSKLITEHAPPQSEDVILRVGESEWHARYSFDHSRRIGGLTGGWKHFALDNNLQEYDVCVFESEGKGKKPPILEVKIFRVDEEFDKANSGGKQVKKKLVETIQA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2240 358 Gene3D - 215 337 IPR015300 -
Dere09g2240 358 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 176 337 IPR044837 -
Dere09g2240 358 MobiDBLite consensus disorder prediction 184 212 - -
Dere09g2240 358 ProSiteProfiles B3 DNA-binding domain profile. 237 335 IPR003340 GO:0003677
Dere09g2240 358 SMART B3_2 237 335 IPR003340 GO:0003677
Dere09g2240 358 CDD B3_DNA 237 333 IPR003340 GO:0003677
Dere09g2240 358 Pfam B3 DNA binding domain 237 325 IPR003340 GO:0003677
Dere09g2240 358 SUPERFAMILY DNA-binding pseudobarrel domain 237 324 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2240 Dere-ChrDere09 32509988 32513578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2240 1 343 REM Transcription Factor Family AT4G33280 27.338 6.65e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere09g2240 B3 9.6e-14 CL0405