Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1653 ATGTCTAAAGTGAGAGATCCTGCTATAAAGCTTTTTGGAAGAGATATTCCGGTAGAGTCAACACACACCATCGATCCGCCTGAAGTCATGGACAGTTGTGATAAATCAACAAGAATTGAAGGCAATGATCCTTTCAGATCTGGCAAGTGGAATAATCCTTCTGAAGAGGCAAACGATATTGGAAACATTTATAAGAGTGAGGCTAAAATAGTTCATAGAATTATGGACTACAAGGCTGCTAGTGGAGATATAGATCATCAAGAAAAAGTTTTCAAAAAGCCAGATCAGGTCCTGCCTTGTCCTCGTTGCAACAGCTTGGAGACTAAGTTTTGCTATTTCAATAATTACAATGTTAACCAACCTAGGCATTTCTGCAAAAATTGCCAGAGATATTGGACAGCTGGGGGGACAATTAGAAATGTTCCTGTGGGGGCTGGAAAGCGCAAAAATAAGCACTCAGCGTTGCCTGTTGCCCCTGATGTAGTATCTGCCACCCACACAGACTCCAACTCTCTTCCTACAGTTTCAAGACCTGTTGGAGGAATTGGGAATATCCCTAGTTTTGGGGAGGAAGCTCCCCTTTGTGAATCCCTGGACACTGTGTTAAATCTAAAAGGCCAGAAAGTAACTGTAAGTAACTCCTCTATCCTTGATGATAGTGAGGATCCTTCCAGAGATTCTGAATCCAAGGAACAGGAATGCTCGGAAAATAGAATAGAGCAGGTAGGTTTGCCACAACAATGTAATGGTTTTAATCCTCTACGTCCACTTCATTATTGTCCTGTTCCTCCATGGGCTTACCAATGGAGCCCATGTTGGAATTCAATGGTCTTTAGACCCAGTCCTGCTTATATGGGTTCTGCAACCATGATGGCAGTCCCAGGTTTCACTGCACCATCATTAGAATTGTCAGCAGCACCTTTATATTGGGGTTGCTTGCCAAGCTGGACTGGTCAGAAGGAAGAGTCTCCATTGGTTGGATCTACATTTAGTGGCGTCCCAGCACCTTCCTCTAGCGCTATCAATAGTGTTTGTTCTGGGACTAAATCTCCAACCTTAGGAAAACATTCCAGAGATGTAAGTAGTCAGGCAGGTGATGCAATGAAACAAAATCTCTGGGTACCTAAGACTTTGAGAATTAATGATCCAGAAGAGGCTGCTAGGAGTTCTATATGGACTGCTTTTGGCGCAAAGAATGAACAGAACAAACCCATTATGAAAGGCAGTGTTTTTAAATCTTTTGAACCTAAGTCAGAAGATGCCAGTTCTCATATTTCAAATACTGATCAAATCCTAAGTGCAAACCCTGCTGCTTTGTCTCGATCTGAATCGTTTCAAGAAAGAATAGTTTCTCTCTCTTCTATCCAGAGGAAACCAAAATTGCGCTATTGGAGAGTCTATCACGGTCAGGAAATCCTTTCTCGGAAACTTGCTGCTGATGAGCGTCAGATTTTGCCTTCTAGCAGTTCTCTTTGGTGGGGGCAATTCATGGAACCAAGCATTGATTGTACATGCCAATTTATTGTGTTTGAGAAAAATGGTGAAGAGAATAAAATACTTATTAGTCAGGGTAATAATGGTTTGCATGGAATTTTCTTTAGCATAGGAGCAGTGCATACAAAGAGGCAAGCAATGGCCCATCCAGAATTTCAATTGTTAGAGAATTCTTCTGATGAATGGCACTTCTTCATGTTGAGAAATAAGGACAGAATAGCAGTTGATATGGCAAGATCATTTTTCAGTTCAGCTGACATGGAACGGTAA 1764 0.4167 MSKVRDPAIKLFGRDIPVESTHTIDPPEVMDSCDKSTRIEGNDPFRSGKWNNPSEEANDIGNIYKSEAKIVHRIMDYKAASGDIDHQEKVFKKPDQVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSALPVAPDVVSATHTDSNSLPTVSRPVGGIGNIPSFGEEAPLCESLDTVLNLKGQKVTVSNSSILDDSEDPSRDSESKEQECSENRIEQVGLPQQCNGFNPLRPLHYCPVPPWAYQWSPCWNSMVFRPSPAYMGSATMMAVPGFTAPSLELSAAPLYWGCLPSWTGQKEESPLVGSTFSGVPAPSSSAINSVCSGTKSPTLGKHSRDVSSQAGDAMKQNLWVPKTLRINDPEEAARSSIWTAFGAKNEQNKPIMKGSVFKSFEPKSEDASSHISNTDQILSANPAALSRSESFQERIVSLSSIQRKPKLRYWRVYHGQEILSRKLAADERQILPSSSSLWWGQFMEPSIDCTCQFIVFEKNGEENKILISQGNNGLHGIFFSIGAVHTKRQAMAHPEFQLLENSSDEWHFFMLRNKDRIAVDMARSFFSSADMER 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1653 587 MobiDBLite consensus disorder prediction 219 237 - -
Dere08g1653 587 MobiDBLite consensus disorder prediction 213 237 - -
Dere08g1653 587 Pfam Dof domain, zinc finger 95 152 IPR003851 GO:0003677|GO:0006355
Dere08g1653 587 ProSitePatterns Zinc finger Dof-type signature. 100 136 IPR003851 GO:0003677|GO:0006355
Dere08g1653 587 ProSiteProfiles Zinc finger Dof-type profile. 98 152 IPR003851 GO:0003677|GO:0006355
Dere08g1653 587 PANTHER CYCLIC DOF FACTOR 2 1 448 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1653 Dere-ChrDere08 22203239 22208350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1653 4 447 C2C2-Dof Transcription Factor Family AT5G39660 34.175 1.78e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere08g1653 zf-Dof 6.1e-32 No_clan