Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0879 ATGGATCCTTCAAGTGGGCAACACCAGCAAATGTCTAGCCAGTCACTGGAGAACATCTTAGCATGTTCAAAGGCACAGAATCAGGAGAGAAAGCCAAGACCTCAGCCAGAACAAGCCCTGAAATGTCCAAGATGTGACTCTACAAACACCAAATTCTGTTACTACAATAATTACAGTCTCTCCCAGCCTAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACCTTGAGGAATGTTCCGGTGGGTGGAGGCTGCAGGAAAAACAAGAGGTCCTCAGCATCTTCCTCATCATCAAAAAGGGTTCAAGATCAGACCCTCATTCCCAATTCCAACCCACTCATAACTACCCTCCCTCCATTATCTTATGACTCCAATGACCTCACTCTTGCATTAGCTAGGCTCCAAAAGCAATCTTGTGGGCAATTGGGTTATGAGGAACATGATTTCTGTGTTTTGGGGAATCCTCTTGGAAATATCTCTTCCTCAAACACTGGATTTCTAGACGCACTTCGTAGTGGGTTTCTTGAAACACAGAGTAACAATCTTCAGAATCTGTACTATACATATGGAAATGGGGACTTGGGCGAAGTGGACATTGGCAATAACAGTCATGCTTGTGGGGTTAACGGGGTTAGTGGAGAGATGGCGTTTCCATATGATCAAGAAGTGAGTAATGCCACTACTCAAGCAGTAACTGTCACTACCATGAAGCAAGAAATCTACAATGGCAAAGAACAAAGTGAGACTAAGGTTTTGTGGGGTCTTCCATGGCAGCTTAATGGAGACACAAATATTGGTGAAATTGATTCAGGAAGATCAAATTGGAATGGTCTCACGTCATCTTGGCATGGGCTTCTTAATAGTCCCCTAATGTAA 888 0.4369 MDPSSGQHQQMSSQSLENILACSKAQNQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSASSSSSKRVQDQTLIPNSNPLITTLPPLSYDSNDLTLALARLQKQSCGQLGYEEHDFCVLGNPLGNISSSNTGFLDALRSGFLETQSNNLQNLYYTYGNGDLGEVDIGNNSHACGVNGVSGEMAFPYDQEVSNATTQAVTVTTMKQEIYNGKEQSETKVLWGLPWQLNGDTNIGEIDSGRSNWNGLTSSWHGLLNSPLM 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0879 295 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Dere07g0879 295 MobiDBLite consensus disorder prediction 1 29 - -
Dere07g0879 295 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Dere07g0879 295 MobiDBLite consensus disorder prediction 92 107 - -
Dere07g0879 295 MobiDBLite consensus disorder prediction 1 41 - -
Dere07g0879 295 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Dere07g0879 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 195 IPR045174 GO:0003700|GO:0006355
Dere07g0879 295 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0879 Dere-ChrDere07 12300832 12302325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0879 1 295 C2C2-Dof Transcription Factor Family AT2G28510 38.485 6.58e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere07g0879 zf-Dof 6e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1127 08 15139535 15140416 Dere07g0879 07 12300832 12302325 PCT