Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1777 ATGAGAAACCATATCCAGTTTCTATTGGGCCTCGCACTCTTCAGCATTCTCTGCTTTGTACAAACCAAATCCATCATCGAACCCTGTGCCTCCTCAGACTCCTGCCCTTCCCTTCTCTCCTATGTCCTCCCTTGGGACTCCAAGCTCTCCGAAATCGCGTCGCGCTTCCACGTCAACGTCTCCGACATCCTCGCCGCGAACTCCGTCTTCCCGATCTCCCAAACCCTCGGCGATCAAATCCTCAGATCCAGGACCACCGTCAAAATCCCCATTCCCTGCCCTTGCGTCGACGGAATTCGAAGATCCATGTCAACAATCTACATCGTCCAAGCATCGGACACACTCGAATCCATCTCCGTCGGTTACGGCGGGCTCGTGAGCGCCGACCAACTTGCGGCGGTCAACAGCATCAATGCGACGAATCGTTTAGTGAACGGCGGGAGGCTGGTGATTCCGTTGCCGTGTACGTGTTTGAACAATGTGAGGAACGGCGAAACGGCAGTGTTTATGTCGTATGTAGTGAGGGAGGGAGAGAGCTTGGGGAGTGTGGCGTCCGGCTCGGGGACGACCGTCTCGGACCTGGAGGCTATTAACGGGTTGGCTCGGGACGCGGTTGAACCGGGAGACATAATAGCGATTCCCGTTGCAGCATGTTCTTCAGCAACTCTGAATTGGTACAACGAGACTCTCATCGTCCCAAATGGCTCCTATGCTCTCACTGCCGCTGACTGCATCAAGTGCAGTTGTGGCGCAATCGATCTTAGGCTACAATGCCGTCCCTCTGGTCTGGAAGTCCCCTGCTTTAATTTACGGTGCAAAGATTCTGATCTTGTAATTGGAGATGAATATGTCACAGACTCAAAATCTGGGTGTAATGTGACACGCTGTCTTTATCGTGGCCACAGAGGTGGTAAGATTCTAAGAAGTATAACGAACGCCTCGCATCTCAAGTGCCCGGATAATCAGACTTATCATGGATCATTACGTTGGCCATCTACAACAAATCCTGTAATGCCATTTGTGGCATTGTCTCCAAGCCCATCACCATTTCCAGGTTCTGATGCCTCTCGTAGAATGCACACTACTCAAGTTTCATTTATCAAATTGGTGAACTCCCTCCTACCACAATTATTCCTATTCCTTATTTGA 1149 0.51 MRNHIQFLLGLALFSILCFVQTKSIIEPCASSDSCPSLLSYVLPWDSKLSEIASRFHVNVSDILAANSVFPISQTLGDQILRSRTTVKIPIPCPCVDGIRRSMSTIYIVQASDTLESISVGYGGLVSADQLAAVNSINATNRLVNGGRLVIPLPCTCLNNVRNGETAVFMSYVVREGESLGSVASGSGTTVSDLEAINGLARDAVEPGDIIAIPVAACSSATLNWYNETLIVPNGSYALTAADCIKCSCGAIDLRLQCRPSGLEVPCFNLRCKDSDLVIGDEYVTDSKSGCNVTRCLYRGHRGGKILRSITNASHLKCPDNQTYHGSLRWPSTTNPVMPFVALSPSPSPFPGSDASRRMHTTQVSFIKLVNSLLPQLFLFLI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1777 382 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 4 321 - -
Dere06g1777 382 Pfam LysM domain 49 75 IPR018392 -
Dere06g1777 382 Pfam LysM domain 107 152 IPR018392 -
Dere06g1777 382 Pfam LysM domain 172 214 IPR018392 -
Dere06g1777 382 CDD LysM 105 151 IPR018392 -
Dere06g1777 382 Gene3D LysM domain 162 224 IPR036779 -
Dere06g1777 382 Gene3D LysM domain 100 161 IPR036779 -
Dere06g1777 382 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Dere06g1777 382 SUPERFAMILY LysM domain 170 214 IPR036779 -
Dere06g1777 382 ProSiteProfiles LysM domain profile. 105 151 IPR018392 -
Dere06g1777 382 SUPERFAMILY LysM domain 105 153 IPR036779 -
Dere06g1777 382 SMART LysM_2 106 152 IPR018392 -
Dere06g1777 382 SMART LysM_2 171 214 IPR018392 -
Dere06g1777 382 CDD LysM 171 213 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1777 Dere-ChrDere06 32682133 32689881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1777 7 356 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 43.539 2.76e-83 258