Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0032 ATGAAGATGGCCGCAGCGCGTCATTGCATAGTGTTTGTGTTGACTTTTATCAGCTTCCTTTTTCTCGGTTTCTCACACACCCCATTTGCAGTGAAAAGGAAAGTAGCTCGTTCATTCGCGATTAGCCTATCATTTGTAGCTATCTCAACAAGTCTCGTGACCCTGTCCGAACTTAGCTTAAGAGAAATGGATCTTGGTAGTGTTGCACGGTTATTGCTATTAATCATATGCGGCATCGCCGTCGCATCAAGGGTTGAGGCCCAGCCGGCGGCGGTGTTCAAATGCAGCACAGAGGGTCAGACATGTCGTTCGCTGGTGGATTATTCGACCCCAAACGCGACAACCTTAAGCAACATTCTAAGCCTCTTCAACTTGAAACATGTTCTGGATATAGTGGGGGCTAACGCTCTGCCCTCAACCACCAGAAGCAACTACACCGTCGGAAAGGGGGACATTATCAGAATCCCCTTCCAGTGCAAGTGCAGCAATGGCACCGGATTGTCCAATGGCCTCCCTATCTACGTCATCAAGAAGAATGACACACTTTTCCACATAGCGGCGGAGGTTTTCTCAGGTTTGGTGACTTACCAGAAAATCGAAGAGGTCAACAACATAACAGACGCAACCACCATCCAGCCCGGCCAGAAGGTGTGGATCCCTCTCCCTTGCAGCTGCGATCAGGTAAACGGAACGGAGGTCGTCCACTATGGACACCTGGTGGCTCAAGGCAGCTCCTTTCAGCAGATTGCTCAACAATACGGCACCACACAGGATACCCTTCTGAAACTCAATAACATTACCGACCCTAAGTCCCTTCAAGCCGGTCAAATCATCGATGTTCCCCTCCAAGCTTGTGCTTCCTCGACGGTGAAAAAAGACTCATTGGACTTCCCTCTGCTCGTTGCAAATGGTACCGACACCTACACTGCCAATGGCTGCGTTAAGTGCACCTGTAACTCTGCCAACAACGCCACATTACAATGCGTGCCATCCCAAATTAAACCAAACAAGTGGCCTACTTGCCCATCTATGCAATGCGGCAATTCAACCATTGGCGATGTCACTTCTACAGCTTCCTGTACTCGCACTCTTTGTGCCTACGCTGGTTATAATGCCCAAAATATATCCGCCACTCTTGCCACCGAGTCCACTTGTCCTGCTACGGCAGGATCCGGAGGATCAGGAGCATCGAGAATCAGCCTGCAAGGCTGGGGTTGGAATCATCTTTTGATTGCCATTCACTTCGCCCTCTTCTGTGTCTATCTTTAG 1269 0.4972 MKMAAARHCIVFVLTFISFLFLGFSHTPFAVKRKVARSFAISLSFVAISTSLVTLSELSLREMDLGSVARLLLLIICGIAVASRVEAQPAAVFKCSTEGQTCRSLVDYSTPNATTLSNILSLFNLKHVLDIVGANALPSTTRSNYTVGKGDIIRIPFQCKCSNGTGLSNGLPIYVIKKNDTLFHIAAEVFSGLVTYQKIEEVNNITDATTIQPGQKVWIPLPCSCDQVNGTEVVHYGHLVAQGSSFQQIAQQYGTTQDTLLKLNNITDPKSLQAGQIIDVPLQACASSTVKKDSLDFPLLVANGTDTYTANGCVKCTCNSANNATLQCVPSQIKPNKWPTCPSMQCGNSTIGDVTSTASCTRTLCAYAGYNAQNISATLATESTCPATAGSGGSGASRISLQGWGWNHLLIAIHFALFCVYL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0032 422 CDD LysM 173 219 IPR018392 -
Dere06g0032 422 SUPERFAMILY LysM domain 237 281 IPR036779 -
Dere06g0032 422 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 70 388 - -
Dere06g0032 422 SMART LysM_2 173 220 IPR018392 -
Dere06g0032 422 SMART LysM_2 237 281 IPR018392 -
Dere06g0032 422 SUPERFAMILY LysM domain 173 221 IPR036779 -
Dere06g0032 422 Gene3D LysM domain 227 293 IPR036779 -
Dere06g0032 422 ProSiteProfiles LysM domain profile. 236 280 IPR018392 -
Dere06g0032 422 CDD LysM 238 280 IPR018392 -
Dere06g0032 422 ProSiteProfiles LysM domain profile. 172 219 IPR018392 -
Dere06g0032 422 Pfam LysM domain 239 281 IPR018392 -
Dere06g0032 422 Pfam LysM domain 174 220 IPR018392 -
Dere06g0032 422 Gene3D LysM domain 172 226 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0032 Dere-ChrDere06 425138 427941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0032 72 390 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 48.447 2.41e-94 286