Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0031 ATGCTTGCGCAGCTTGGCTCCTTAGTTCATTGGATTGTGCTTCCTTCTCATATGTGGATGCTGTTCCGTTATCGTTGTTCTGGTTCACCTGGGTTCTTTGATCTTTGCGGACGCCGGTACCTTACTTTCCTCCTCACCCATTCATTCACGATTCACAAACCATATTCAAATCTTTGTAGCTCAGCTTGTCTTGTCCAAACAACACAAAAGAGAATGGGTTCTGGTACTATGGAGGAGTTTGTTGTGCCACAGCTATTTCCAGTAATTATATGTGCTGTGTTGGCGACATCAGGGGCTGAAGCTCAGGCAGAGTCCATGTTCAAGTGCAGCACGGAAGGCCAAACGTGTGGTGGTCTGGTGGATTATTCCTCGCCAAACCGCACCACCTTGGACCGCATTCAATCCCTCTTCAACGTACCACTCCTTCTGGACATAGTGGGAGCTAACGGCCTGCCTGCAACCACCCCACCCAACCACACCGTCGGAAAGGGGGACATTATTAGAATCCCCTTCCAGTGCAAGTGCAGCAACGGCACCGGATTGTCCAATGGCCTCCCTATCTACGTCATCAAGAAGGATGACACACTTTCCCACATAGCGGCGGAGGTTTTCTCAGGTTTGGTGACTTACCAAAAAATCGAAGAGGTCAACAACATAACAGACCCAACCACCATCCAGCCCGACCAGAAGGTGTGGATCCCTCTCCCTTGCAGCTGCGATCAGGTGAACGCGGCCACCGTTGTCCACTATGGACACTTGGTGGCTAAAGGCAGCTCCGTTCAACAGATTGCTCAACAATACGGCACCACCCAGGATACCCTTCTCAAACTCAATGGCATTTCTGATCCTAACGCCCTCCAAGCCGGTCAAATCATCGACGTTCCCCTCAAAGCTTGTTCCTCCTCGACGCTGAAAAGTGACTCTTTGGACTTCCCTCTTCACGTTGCAAACGGCACTGACACCTACACTGCCAATGGCTGCGTCAAGTGCAGCTGTAACTCCGCCAACAACGCCACATTACAATGCGTGCCATCCCAAATTAAACCAAACAAGTGGCCTACTTGCCCATCTATGCAATGCGACAATTCAACCATTGGCGATATCACTTCTACAGCTTCCTGCACTCGCACTCTTTGTGCCTACGCTGGTTATAATGCCCAAACTATATCCACCACTCTAGCCACCGAGTCCACTTGTCCAGGGTCAGCAGCATCAAGGATTAGCCTGCATGGCTGGGGTTGGAATCATCTTTTGATTGCCATTCACTTAATCCTCTTTTCTGTCCATCTTTAG 1293 0.5012 MLAQLGSLVHWIVLPSHMWMLFRYRCSGSPGFFDLCGRRYLTFLLTHSFTIHKPYSNLCSSACLVQTTQKRMGSGTMEEFVVPQLFPVIICAVLATSGAEAQAESMFKCSTEGQTCGGLVDYSSPNRTTLDRIQSLFNVPLLLDIVGANGLPATTPPNHTVGKGDIIRIPFQCKCSNGTGLSNGLPIYVIKKDDTLSHIAAEVFSGLVTYQKIEEVNNITDPTTIQPDQKVWIPLPCSCDQVNAATVVHYGHLVAKGSSVQQIAQQYGTTQDTLLKLNGISDPNALQAGQIIDVPLKACSSSTLKSDSLDFPLHVANGTDTYTANGCVKCSCNSANNATLQCVPSQIKPNKWPTCPSMQCDNSTIGDITSTASCTRTLCAYAGYNAQTISTTLATESTCPGSAASRISLHGWGWNHLLIAIHLILFSVHL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0031 430 CDD LysM 187 233 IPR018392 -
Dere06g0031 430 Pfam LysM domain 253 295 IPR018392 -
Dere06g0031 430 Pfam LysM domain 188 234 IPR018392 -
Dere06g0031 430 SUPERFAMILY LysM domain 251 295 IPR036779 -
Dere06g0031 430 ProSiteProfiles LysM domain profile. 186 233 IPR018392 -
Dere06g0031 430 Gene3D LysM domain 242 308 IPR036779 -
Dere06g0031 430 ProSiteProfiles LysM domain profile. 250 294 IPR018392 -
Dere06g0031 430 SUPERFAMILY LysM domain 187 235 IPR036779 -
Dere06g0031 430 CDD LysM 252 294 IPR018392 -
Dere06g0031 430 SMART LysM_2 187 234 IPR018392 -
Dere06g0031 430 SMART LysM_2 251 295 IPR018392 -
Dere06g0031 430 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 86 403 - -
Dere06g0031 430 Gene3D LysM domain 186 241 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0031 Dere-ChrDere06 421451 423686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0031 101 404 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 51.140 3.05e-93 283