Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2496 ATGGCCAGAATGCCGAATCAAAAACCCATTTTGCAGAGCACTTTCTTTCTGTTACTTTTGCAGGTTTTAACCAATGTAGCACCCGTGAGCTCCAAATCTACAATCGAGCCTTGCTCAAACTCCGACTCCTGCAATGCCCTGCTCGGCTACACTCTTTACACTGACCTAAAGGTCTCTGAGGTGGCTTCCCTCTTTCAAATCGACCCCATTGCTTTTCTCACCGCCAATGCCATCGACATTTCTTACCCTGACGTAGAGCACCACATTCTTCCCTCCCAACTCTTCCTCAAAATCCCCATCATCTGTTCGTGCGTTGATGGAATTCGTAAATCAGTGTCGACCCATTACAAAACTCGGCCTTCTGATTCCCTCTCATCGATTGCGGATTCTATATACGGGGGTCTGGTCTCTGCTGACCAGATTAGGGAGGCGAATTCCATATCCGACCCTTCAATACTGGACGTGGGTCAGAACCTTGTGGTGCCCCTTCCATGCACTTGCTTCAATGGGACCGATAACACTTTGCCTGCGATTTACCTGTCGTATGTGGTGCAGCCAATTGACACTTTGGCTGCGATTGCTGTGAGGTATTCCACCACTCTTACTGATTTGATGGATGTCAATGCCATGGGGAGTACGGCTATAAGCGATGGTGATATTCTTGCTATTCCAATTCCGGCTTGCGCATCAGATTTTCCAAAATATACCGCTGATTATGGTTTGCTTGTCCCTAACGGAAGCTATGCGATTACAGCAAGTCATTGTATGCAGTGTAGCTGTGGACCACGAAATCTGAATTTGTACTGTATGCCTGCTTCTCTGGCCGTTTCTTGTTCTAGCATGCAATGTAAAAACAGCAACCTGGAGGTTGGGAATGTTACAGCACAACAGAGTAGTGCTGGGTGCAATGTTACTTCTTGTATTTATGACGGTTTTGTTAATGGCACAATAATAACAACGTTGTCCACATCTCTTCAGCCTCGGTGCCCAGGGCCACAGCAATTTCCACCACTTTTAGCTCCGCCTACTACTGTCACGAGGATTTCAGAATATGCACCATCACCATCCCCTCAGTCGTATTTAGGTGGTCCAACAAACCCCAAATCTTCAGTGGTGCCTGCAAACGGGTCATTTCCTGGATTCACCCCGGCAAATGGCCCGGCTAGTGGGTTGTTGTCTGGTGCTTCTGCTGCAAGCTCCATGATGAATCCGTTACCCACTTTGACATCTGCGCTTGTGTTATTGCTTGTCAAGTTGCTGATCTTTGTAGCATAG 1275 0.4745 MARMPNQKPILQSTFFLLLLQVLTNVAPVSSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIAFLTANAIDISYPDVEHHILPSQLFLKIPIICSCVDGIRKSVSTHYKTRPSDSLSSIADSIYGGLVSADQIREANSISDPSILDVGQNLVVPLPCTCFNGTDNTLPAIYLSYVVQPIDTLAAIAVRYSTTLTDLMDVNAMGSTAISDGDILAIPIPACASDFPKYTADYGLLVPNGSYAITASHCMQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLEVGNVTAQQSSAGCNVTSCIYDGFVNGTIITTLSTSLQPRCPGPQQFPPLLAPPTTVTRISEYAPSPSPQSYLGGPTNPKSSVVPANGSFPGFTPANGPASGLLSGASAASSMMNPLPTLTSALVLLLVKLLIFVA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2496 424 SMART LysM_2 181 224 IPR018392 -
Dere05g2496 424 SMART LysM_2 115 162 IPR018392 -
Dere05g2496 424 CDD LysM 114 161 IPR018392 -
Dere05g2496 424 Gene3D LysM domain 171 231 IPR036779 -
Dere05g2496 424 SUPERFAMILY LysM domain 180 225 IPR036779 -
Dere05g2496 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 333 - -
Dere05g2496 424 Gene3D LysM domain 110 170 IPR036779 -
Dere05g2496 424 ProSiteProfiles LysM domain profile. 180 223 IPR018392 -
Dere05g2496 424 CDD LysM 181 223 IPR018392 -
Dere05g2496 424 Pfam LysM domain 116 162 IPR018392 -
Dere05g2496 424 Pfam LysM domain 182 224 IPR018392 -
Dere05g2496 424 ProSiteProfiles LysM domain profile. 114 161 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2496 Dere-ChrDere05 35509284 35511906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2496 7 399 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.025 0.0 553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2496 05 35509284 35511906 Dere05g2496 05 35509284 35511906 ECH