Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1568 ATGGAAGAGGGCTATATGCATGAAGATGATTTGGGGCTTGATATTGTAGTTGATGCGTTGACCGTGATAATTAATTGGCGACGAAATCTACGGTCAATTATGGATTTAGGATTAAGGAATGGGAAGGAAGATATGCCACGTATCTCTCTGGAGAGGATGTTACAGTACTACTCAGTTGGTTGTGATGTGGATCCTAAGCCATTGCCGAGGTGGAAACCCAGCATCGTTGAACCAGCTCCGAATTGCCCTCGTTGTGCTTCTTCCAACACCAAATTCTGTTACTACAATAACTACAGCTTGTCCCAGCCCAGGTACTTGTGTAAAGCTTGCCGTCGCTACTGGACCAAAGGCGGCTTCCTCCGCAACGTCCCCGTCGGCGGTGGCTCCCGCAAGTCCCGCCGTACTAAAACCCCCAGGCTCCCACAAACCCATCGTCCTTCCACGAGTAATACTGCCAGTGAAGAGTCAGCGGCTGATAAATCATCCCACAAACACGAAGCCAGTGGGTCGGATATTGACATGGCTCAGGGATACGTTGCTCAATCTCCAGTTCTTTACAAAAATACTACATCTGTGGTGATATCTACGGCGGCTACTTATACGATCCGGAGTCCAAAGGAAAGCTGTAGGCTGGTGAAGATACTCTGA 648 0.4877 MEEGYMHEDDLGLDIVVDALTVIINWRRNLRSIMDLGLRNGKEDMPRISLERMLQYYSVGCDVDPKPLPRWKPSIVEPAPNCPRCASSNTKFCYYNNYSLSQPRYLCKACRRYWTKGGFLRNVPVGGGSRKSRRTKTPRLPQTHRPSTSNTASEESAADKSSHKHEASGSDIDMAQGYVAQSPVLYKNTTSVVISTAATYTIRSPKESCRLVKIL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1568 215 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Dere05g1568 215 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 70 173 IPR045174 GO:0003700|GO:0006355
Dere05g1568 215 MobiDBLite consensus disorder prediction 125 169 - -
Dere05g1568 215 MobiDBLite consensus disorder prediction 141 156 - -
Dere05g1568 215 Pfam Dof domain, zinc finger 80 134 IPR003851 GO:0003677|GO:0006355
Dere05g1568 215 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1568 Dere-ChrDere05 25322162 25326741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1568 67 204 C2C2-Dof Transcription Factor Family AT1G21340 46.053 3.51e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere05g1568 zf-Dof 1.1e-31 No_clan