Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1483 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGAGTGGTTAAACCCATGGAATTAGGTTCAAATCCAAAGCCTCCTATGTTGGAGAGAAAGGCAAGGCCTCAGAAAGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAGTTCTGTTACTACAACAACTACAGCCTCTCTCAGCCAAGATACTTCTGTAAGACTTGTAGAAGGTATTGGACTGAAGGAGGCTCTCTCAGAAATGTTCCTGTGGGTGGAGGTTCAAGAAAAAACAAGAGACCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCCATCACCATCAACAGCACCAAAGAAACTTCCAGAAGCATCTCAGAACCCCAATAACAATAAGATCCACCAAGCCCAAGATCTTAACTTGGCATATCCACCACCACCACCACAACCTGAGATTTCTAGTACTTCTAATTCGAGGGGTTTGATGAATTCATTGATGCCTATGTCGGTTTCATCTGATGGAAGCATGATATACAATAGTAACAGTAATTCAGCTCATGGATTCCCTTTGGAGTTCAAGCCTCATCCTCAAGGGCTCAACTTTAGTTTTGAGGGCTTTGAAAATCATGGATTAATTGGGGGTGGTCTTCATCAGGGAATGCAATTAGGGGGTTCTGCTGGTGGTGCCAGGATCTTGTTTCCTATTGAGGATTTGAAGAACGTGCCAAGCACTACCACTACTCATGAGTTCGATCAACAGAATAATAGAGGAGGCCAAGCGGATTCGAGTGGGTTTTGGAACGGCATGTTAGGTGGAGGAGCGTGGTAG 807 0.4486 MDTAQWAQGNIGVVKPMELGSNPKPPMLERKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPSSSSSSSSSPSPSTAPKKLPEASQNPNNNKIHQAQDLNLAYPPPPPQPEISSTSNSRGLMNSLMPMSVSSDGSMIYNSNSNSAHGFPLEFKPHPQGLNFSFEGFENHGLIGGGLHQGMQLGGSAGGARILFPIEDLKNVPSTTTTHEFDQQNNRGGQADSSGFWNGMLGGGAW 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1483 268 Pfam Dof domain, zinc finger 37 94 IPR003851 GO:0003677|GO:0006355
Dere05g1483 268 MobiDBLite consensus disorder prediction 17 38 - -
Dere05g1483 268 MobiDBLite consensus disorder prediction 238 257 - -
Dere05g1483 268 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Dere05g1483 268 MobiDBLite consensus disorder prediction 91 130 - -
Dere05g1483 268 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Dere05g1483 268 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 172 IPR045174 GO:0003700|GO:0006355
Dere05g1483 268 MobiDBLite consensus disorder prediction 238 255 - -
Dere05g1483 268 MobiDBLite consensus disorder prediction 78 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1483 Dere-ChrDere05 24253548 24254935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1483 1 268 C2C2-Dof Transcription Factor Family AT4G24060 38.462 2.80e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere05g1483 zf-Dof 1.3e-33 No_clan