Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1249 ATGGACACAGCTCAGTGGGCACAGGGGATTGGAGTGGTTAAACAGCCCATGGAAGGTTCAATTTCAAAGCCTCCTATGACTGAAAGAAAGGCAAGGCCTCAGAAAGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACCAACACTAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACCGAGGGTGGGTCTCTGAGAAATGTTCCCGTGGGAGGAGGCTCACGAAAGAACAAGAGATCATCAACTTCTTCTTCATCTTCATCTTCATCAACAACATCTTCAAAGAAGCTTCCTGATCTGAACCCCAAGATCCACCAAGGTCAAGATCTTAACTTAGCATACCCCCCTCCAGCACCTGAGGACTATAATAATAGCATATCAAAATTTATCGAGGTTCCTTATAGTACTGAAGATAAGGCTCCTTCTCATGATCAGTTATCCCCTATGGAGCTTCTGAAAACTGGGATTACGTCATCAAGGGGTTTGAGTTCTTTAATGCCTATGTCGGTGTCAGACTCTTCCAGCACAGCAATGTATAATTCAAGTGGGTTTCCTTTGCAAGAGTTTAAGCCTCCTCCAGGGCTTAGCTTCACTCTCGAAGGGTTTGAAAATGGGTATGGGGGTATTTCTGGAATACAAGAGGGAAGTAGTAGTGGTGGTGCAAGGGTGTTGTTTCCTATTGAGGATTTGAAGCAAGTTCCAAGTAGTACTGATCACTATGAGCAGAATAGAAGCCAGGGCGATTCAACGGGGTTTTGGAATGGCATGTTAGGTGGAGGATCGTGGTTACAGCTTCTGTATGTCATAACCTATATCTTGGATTTTGAGCTCGATTTGCTTTACGTCAAGAACTGTAGCTCTTGGACTTTTGCCAGATCTTCTCTCGCAATTTGCTTACCGTTCTACGATAGCTTGCACTCAACACGTTGA 972 0.4444 MDTAQWAQGIGVVKQPMEGSISKPPMTERKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSTSSSSSSSSTTSSKKLPDLNPKIHQGQDLNLAYPPPAPEDYNNSISKFIEVPYSTEDKAPSHDQLSPMELLKTGITSSRGLSSLMPMSVSDSSSTAMYNSSGFPLQEFKPPPGLSFTLEGFENGYGGISGIQEGSSSGGARVLFPIEDLKQVPSSTDHYEQNRSQGDSTGFWNGMLGGGSWLQLLYVITYILDFELDLLYVKNCSSWTFARSSLAICLPFYDSLHSTR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1249 323 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Dere04g1249 323 MobiDBLite consensus disorder prediction 1 37 - -
Dere04g1249 323 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Dere04g1249 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 174 IPR045174 GO:0003700|GO:0006355
Dere04g1249 323 Pfam Dof domain, zinc finger 36 93 IPR003851 GO:0003677|GO:0006355
Dere04g1249 323 MobiDBLite consensus disorder prediction 88 113 - -
Dere04g1249 323 MobiDBLite consensus disorder prediction 80 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1249 Dere-ChrDere04 14266419 14268221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1249 26 276 C2C2-Dof Transcription Factor Family AT3G61850 45.818 1.54e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere04g1249 zf-Dof 1.4e-33 No_clan