Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1028 ATGCCAAATCAAAAGTCCATGTGGCAAAGCACTATCCTCTTGTTACTTTTGCCGGTCTTAATCAATGTAGCTCATGTGAGCTGCAAATCTACAATCGAGCCTTGTTCGAACTCCGACTCTTGCAATGCTCTGCTCGGATATACGCTCTACACTGACCTTAAGGTCTCTGAGGTGGCTTCCCTCTTTCAAATCGACCCTATTGCTCTTCTCACAGCCAATGCCATTGACATTTCTTACCCCGACGTGGAGCATCACATTCTTCCCTCCCGGCTCTTCCTCAAAATCCCTATTACTTGTTCGTGTGTTGATGGAATTCGTAAATCCGTGTCGACCCATTACAAAATTCGGCCCTCTGATACTCTCCCGTCGATTGCGGATTCGATTTATGGCGGTCTGGTGTCTGCTGACCAGCTCAGGGAGGCCAATTCGATAACGGACCCTTCTGTGTTAGATGCGGGTCAGAATCTTGTGGTGCCGCTTCCATGCACTTGCTTCAACGGGACTGATAACTCTTTGCCTGCAATCTACCTGTCGTATGTGGTCCAGCCAATTGATACTTTGGCTGCAATTGCCGCGAGGTATTTCACTACTCTCACCGACTTGATGAATGTCAATGCCATGGGAAGTACAGCTATCACCGATGGTGATATTCTCGCTATACCAATACCGGCTTGCGCATCAGATTTCCCAAAATATGCCTCTGATCATGGCTTGCTTGTCCCTAATGGAAGCTACGCCATTGCAGCCGGTCACTGTGTGCAATGTAGCTGTGGGCCACGAAATTTAAATTTATACTGTATGCCTGCTTCTCTGGCTGTTTCTTGTTCCAGCATGCAATGTAGAAGAAGCAATCTTATGCTCGGGAATGTTACAGTGCAACAAAATAGTGGTGGCTGCAATGTTACTTCTTGTAGTTATGATGGTTTTGTTAATGGCACCATAATAACAGCGTTGTCTGCATCTCTTCAACCTCGATGCCCAGGGCCGCAGCAATTCCCTCCACTCATAGCACCGCCTACTTCTGTTGCGAGAGATTCAGTATTTGCACCAGCACCATCACCTCTGCCAGATGGAGCCGGTCCATTGTCACCTAAATCATCGGTGGTGCCAGCGACGGGGTCATTTCCAGGTGTCCAACCTGCAAATGGCCCTATTAGTGGGCTTTCCTCTGGTGCTTCTGCTGCTTGCTCCTTAGTGAAGCCATTGCTCACTTTGACATCTGCGCTTGTGTTTTTGCTTGTTAAGTTGATGATCCCTTCGGCATTGTAA 1269 0.4791 MPNQKSMWQSTILLLLLPVLINVAHVSCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPITCSCVDGIRKSVSTHYKIRPSDTLPSIADSIYGGLVSADQLREANSITDPSVLDAGQNLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYFTTLTDLMNVNAMGSTAITDGDILAIPIPACASDFPKYASDHGLLVPNGSYAIAAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCRRSNLMLGNVTVQQNSGGCNVTSCSYDGFVNGTIITALSASLQPRCPGPQQFPPLIAPPTSVARDSVFAPAPSPLPDGAGPLSPKSSVVPATGSFPGVQPANGPISGLSSGASAACSLVKPLLTLTSALVFLLVKLMIPSAL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1028 422 SMART LysM_2 112 159 IPR018392 -
Dere04g1028 422 SMART LysM_2 178 221 IPR018392 -
Dere04g1028 422 MobiDBLite consensus disorder prediction 347 366 - -
Dere04g1028 422 CDD LysM 178 220 IPR018392 -
Dere04g1028 422 SUPERFAMILY LysM domain 111 160 IPR036779 -
Dere04g1028 422 SUPERFAMILY LysM domain 177 222 IPR036779 -
Dere04g1028 422 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Dere04g1028 422 Gene3D LysM domain 168 228 IPR036779 -
Dere04g1028 422 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Dere04g1028 422 CDD LysM 111 158 IPR018392 -
Dere04g1028 422 Gene3D LysM domain 107 167 IPR036779 -
Dere04g1028 422 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 330 - -
Dere04g1028 422 Pfam LysM domain 179 221 IPR018392 -
Dere04g1028 422 Pfam LysM domain 113 159 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1028 Dere-ChrDere04 10993344 10995564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1028 29 397 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 73.046 0.0 558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1028 04 10993344 10995564 Dere04g1028 04 10993344 10995564 ECH