Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1037 ATGCAGGAAATACATTCCATCGGAGGAGATAGATTATTCGGCGCCGGTGGTGGCGGTGGAGACAGGAGGCTCAGACCTCACCACCACCACCACAACCAAAATCACCAGGCGTTGAAGTGCCCAAGGTGTGACTCCCTCAATACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGCCATTTCTGCAAGAGCTGCCGGAGATACTGGACCAAAGGCGGCGTCCTCCGTAATGTCCCCGTTGGCGGCGGTTGTCGCAAATCCAAGCGCTCCAAGCCCAAACACTCTTCCTCGGAAACCCCCTCCGTCGCAGCCACTCCAGCACCACCGCCGGCGCCGTCGTCTTCGCAACCGGAGCACGAGCGTAAGACATCGAATTCACATTCCAGCAGTGAAAGTTCCAGTCTCACCGCTGCTGCTGTCGCCGCCACAGAAGCGGTATCAGCGCCTTCGTACAAGTCGGCGTCCAATAACTTGTTGGACACTCTTCAAAACTCGAAGTTCTTCGTCCATAACAATTCGAACCCTAGTTTGGAACCAGGCATGATGGAACAAGGAGGAGACTCCGGGATTTTCTCGGAGATAGAGAACTTGACGAGCTTGATCACATCCACGAGCGAGGCATTGGCGTTTGGATACGGCAATATCCCCGATGCGTCGTCGTATCAGTTCAGCAGTCAGTGGCAGAAGGGGATGAGCGCGAGTGATCAACGTCATGATGGCTTAGAGTTCCCGGAGATGACCACGACTGGATCGTTGCTTGATCAGACGGTCCCCGTGGATTTGCCGGCGGTGCAAAATAAATTCGGGCCGTTGGATTGGCAGGGGAGTACGGATCAAGGTTTGTTTGATCTTCCTAATACCGTAGATCAGGCTCACTGGAGTCACAATCAGTGGAATCAAGACAATCCTAGTCTCTTTCATTTACCTTAA 939 0.5335 MQEIHSIGGDRLFGAGGGGGDRRLRPHHHHHNQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRSKPKHSSSETPSVAATPAPPPAPSSSQPEHERKTSNSHSSSESSSLTAAAVAATEAVSAPSYKSASNNLLDTLQNSKFFVHNNSNPSLEPGMMEQGGDSGIFSEIENLTSLITSTSEALAFGYGNIPDASSYQFSSQWQKGMSASDQRHDGLEFPEMTTTGSLLDQTVPVDLPAVQNKFGPLDWQGSTDQGLFDLPNTVDQAHWSHNQWNQDNPSLFHLP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1037 312 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Dere03g1037 312 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Dere03g1037 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 216 IPR045174 GO:0003700|GO:0006355
Dere03g1037 312 MobiDBLite consensus disorder prediction 82 139 - -
Dere03g1037 312 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Dere03g1037 312 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1037 Dere-ChrDere03 16329189 16330127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1037 21 309 C2C2-Dof Transcription Factor Family AT5G60850 42.384 4.67e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere03g1037 zf-Dof 2.6e-33 No_clan