Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1621 ATGAGCGGTGGAGGAGAAATGTCTGAGAAGGATCCCGCTATCAAGCTATTTGGCAGGAGGATTCCCTTGCCGGAATGTCAGATTCCGGTGACCTCTCGATTGGCTTCCCAGATTCCGGCCAACTCCGGCACCATGGATGTATGCAGCAGCTTAAAGAAAACAGAAGCAGAAAGAGTTTGTGCGAAAAACTCTGAGCAACATGAGAATGTCTCTGATTTAGCAGCTAGTAAGAGAGGGTCCCAAATTAATCAGCAAGAAAATGAGCCAAAAGCCTACCCCATGCTTGTGGAAGAAAAAATGGAAACTAGTACAGATCAAGATAAAACATTTAAGAAACCAGACAAGATTCTTCAGTGTCCAAGATGCAACAGTTTGGACACAAAGTTTTGTTATTTTAATAACTACAATGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGATATTGGACTGCTGGTGGAACAATGAGGAATGTTCCGGTGGGCGCAGGGAGACGGAAGAACAAGCACTTAGCCTCTCAGTTCCGCCACATCATAGTATCCTCCGATGGAATTCCAACCTCCAGGTTAGAAACCACTGACTCATCTAGTCACCAACTTATCTCAATTCCTGAATCCTCAGCTGCTTTCAGGTCTTCAATGGCAGTGGATAATGGTATTGTATTGAAATTTGGTCCAGATGCCCCTCCTCTCTGTGAATCCATGGAGACAATGCTTAATATTAGAGACCAGGAAAGAAAAGTTGATGCAGAAAATAGGAAGGAGCCATCGTTATGTGGATCTTCAGTAACAAATGGTAGTGGTGCAGAACTTGTCATGCAAAAAGAGCAATGTGTTTCTAGTCATCTTAATACATCAAAACAATTGCAGTGTTACCCTGTTTCTCCATGGGTGTTTCCTTGGAATCCAGATTGGAATAGTGTCATTTCCATGACTACAGGTCATCAATCTTCAGCTCCAATGCAGTGGTTTCCTACACCGTTTGTAGCAGTTCCTGGCATGTGCCCACCTAGCATTCCTTTGCAATATGCACCACCATCATACTGGGCTGCCGGAGCCGGGACACTATCAATGGGATCCAATGGTTGCCTTTCGCCCTCATCGTCAACGAGTAATAGCTGCTGCTCAGGCAATGGCTCACCAACTTTGGGAAAACACTCTAGAGATGCAATGTTCACTGATGAAGAGAAGTCAGAGAAGTGTGTTTTGGTTCCAAAGACACTTAGGATTGATGATCCAAATGAGGCCTCAAAAAGCCCTATATGGGCTACATTAGGTATAAAGCCTGACAAGAAAGAGTCTGAATCAGAAGATGGTAGTTCAAAAAAATTGGAAGTTGAAGGAGAAGGCAAAGACCGTGTGTTGGGTGTTTCTCAAATCTTGGAAGCTAACCCAGCTGCTATCTCTCGGGCTCATGCATTCCAGGAGAGCAGATGA 1440 0.4424 MSGGGEMSEKDPAIKLFGRRIPLPECQIPVTSRLASQIPANSGTMDVCSSLKKTEAERVCAKNSEQHENVSDLAASKRGSQINQQENEPKAYPMLVEEKMETSTDQDKTFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFRHIIVSSDGIPTSRLETTDSSSHQLISIPESSAAFRSSMAVDNGIVLKFGPDAPPLCESMETMLNIRDQERKVDAENRKEPSLCGSSVTNGSGAELVMQKEQCVSSHLNTSKQLQCYPVSPWVFPWNPDWNSVISMTTGHQSSAPMQWFPTPFVAVPGMCPPSIPLQYAPPSYWAAGAGTLSMGSNGCLSPSSSTSNSCCSGNGSPTLGKHSRDAMFTDEEKSEKCVLVPKTLRIDDPNEASKSPIWATLGIKPDKKESESEDGSSKKLEVEGEGKDRVLGVSQILEANPAAISRAHAFQESR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1621 479 MobiDBLite consensus disorder prediction 62 85 - -
Dere02g1621 479 ProSiteProfiles Zinc finger Dof-type profile. 117 171 IPR003851 GO:0003677|GO:0006355
Dere02g1621 479 Pfam Dof domain, zinc finger 114 171 IPR003851 GO:0003677|GO:0006355
Dere02g1621 479 MobiDBLite consensus disorder prediction 429 453 - -
Dere02g1621 479 ProSitePatterns Zinc finger Dof-type signature. 119 155 IPR003851 GO:0003677|GO:0006355
Dere02g1621 479 PANTHER CYCLIC DOF FACTOR 2 9 478 IPR045174 GO:0003700|GO:0006355
Dere02g1621 479 MobiDBLite consensus disorder prediction 66 85 - -
Dere02g1621 479 MobiDBLite consensus disorder prediction 428 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1621 Dere-ChrDere02 15918257 15920779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1621 11 478 C2C2-Dof Transcription Factor Family AT5G39660 34.682 3.60e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere02g1621 zf-Dof 2.7e-32 No_clan