Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1258 ATGGAGAGGAGCGGCTGGAAGCCTAATGTAGAGATATCTCCAAACTGTCCGAGATGTGGGTCTTGCAACACCAAGTTCTGCTACTACAATAATTACAGCTTAACTCAACCTCGCTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCGCTCCGGAATGTTCCTGTGGGGGGTGGCTGCCGGAAGAACAGACGTGGCAGTAAGACCTCCTCCAGACAATCCATGGATGCCCTTCCTTCCAACATTTCACCTAATGGAGATAACTGCGATCCCACAAAAACTTCATCTTCATGTGGCTCCTCGGGGGTGTCTGATGCTCCAAATATTGATCTTGCACTTGTTTATGCAAATTTCCTCAATCAAAAGCCAGAGTCAAGCGTGCCAAGCACGCAAGTTGTTGGTTTGCCCGAAGATGATCAACTCGGTGTTGTTGGGTGTTTGACAGAACCCCATTTGTGTGAGGGTGATCAAATGTACTTGTACGGGTTCAACTCGATGCCGCAAAATCAAGAAGATGGAATGGATCAGCGGTGTAGTAGTAGTCATGATCCTGTGAATTTTGAGTTGCCACCATTGCCAGGTGAAGAAGCAGCTTTTGATGATATGATGTGGTCCAATTCTTCCTTGCACTCCACACAGCCCTCTCTTTTTGGTGCTGATGCTCATGATGCAGACTTGTTAATGGATAATTGGAGCCATTTCGATTTGTCCAGGCCTTGA 729 0.4719 MERSGWKPNVEISPNCPRCGSCNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGSKTSSRQSMDALPSNISPNGDNCDPTKTSSSCGSSGVSDAPNIDLALVYANFLNQKPESSVPSTQVVGLPEDDQLGVVGCLTEPHLCEGDQMYLYGFNSMPQNQEDGMDQRCSSSHDPVNFELPPLPGEEAAFDDMMWSNSSLHSTQPSLFGADAHDADLLMDNWSHFDLSRP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1258 242 MobiDBLite consensus disorder prediction 73 105 - -
Dere02g1258 242 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 6 37 IPR017896 -
Dere02g1258 242 MobiDBLite consensus disorder prediction 59 105 - -
Dere02g1258 242 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Dere02g1258 242 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 186 IPR045174 GO:0003700|GO:0006355
Dere02g1258 242 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Dere02g1258 242 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1258 Dere-ChrDere02 12033225 12033953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1258 6 240 C2C2-Dof Transcription Factor Family AT3G52440 41.603 7.70e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere02g1258 zf-Dof 2.2e-30 No_clan