Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2194 ATGTCGCGGAAAGATCCGGCTTTTAAGCTCTTCGGCCATCAGATTCCATTCCCGGAATGTCAGATTCCGTTCACCTCGTCTCAGATTCCGGATGATTGCAGTAGCTTAAAGAAATCAGAAGTTGGAAGGCCTTGTGCTGAAAACTCTGAACAACTTGAAAATTCATCTGATTTAGGAGATAGTAATAACGATTCCCAGCATAATGTGCAAAAAAATGAGCCAAAAGTAAATCCCACTTCAATGGAAGATAAAATGAAGACCAGTAGTACAGATGAAGATAAAATGTTGAAGAAACCAGAGAAGATTCAACAGTGTCCACGATGCAACAGTATGGACACAAAGTTCTGTTACTTCAATAACTACAATGTGAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGATATTGGACCGCTGGTGGAACAATGAGAAATGTTCCAGTGGGTGCTGGAAGACGGAGGAACAAGCAGCTTTCCTCACAATACCACCGCCACATCATAGTATCCTCCGAAGGAATTCCAATTCCAACCACCAAGTTGGAAACCTCAGACTCATCTTCTCACCAGCTTTTCTCAACTCTTGAATCCTCAGCTGCTTTCAGGTCATCACCACCAGATAGCAGTACAGTGTTGAAATTTGGTCCAGATGCCCCTCTTTTTGAATCAGCAGGTTCTATTCTTAATCTTGGAAATGGGGAGGAGCCATCCCTGTGTGGATCTTCTGTGACCAATACTAGCAATGCTCAGGGAAATGAATCATCAGAACTTATAATGCAAAGGGACAGAGGTGTGTCCAATGAGCTTAAAACATCAAATGGTGTGCAATGTTATCCTGTTGCTCCATGGGTGTTTCCAGTACAGTGGTATCCAGGGAATGGGATGTGTCCACCAAACATTCCTGTACAATTTGTGGCAGGACCGTGTTGGAGTGGGACTTTATGGGCTGCGGGAGGAACAGGTACAGTTTCAATTGGCTCTAATGGTTGCCTCTCATCCTCGTCCTCAACCAGTAACAGCTATTGCTCAGGCAATGGCTCCCCACCAATCCTTGGAAAACACAGATGA 1065 0.4413 MSRKDPAFKLFGHQIPFPECQIPFTSSQIPDDCSSLKKSEVGRPCAENSEQLENSSDLGDSNNDSQHNVQKNEPKVNPTSMEDKMKTSSTDEDKMLKKPEKIQQCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRNKQLSSQYHRHIIVSSEGIPIPTTKLETSDSSSHQLFSTLESSAAFRSSPPDSSTVLKFGPDAPLFESAGSILNLGNGEEPSLCGSSVTNTSNAQGNESSELIMQRDRGVSNELKTSNGVQCYPVAPWVFPVQWYPGNGMCPPNIPVQFVAGPCWSGTLWAAGGTGTVSIGSNGCLSSSSSTSNSYCSGNGSPPILGKHR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2194 354 MobiDBLite consensus disorder prediction 77 98 - -
Dere01g2194 354 MobiDBLite consensus disorder prediction 332 354 - -
Dere01g2194 354 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Dere01g2194 354 MobiDBLite consensus disorder prediction 28 98 - -
Dere01g2194 354 MobiDBLite consensus disorder prediction 48 76 - -
Dere01g2194 354 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
Dere01g2194 354 Pfam Dof domain, zinc finger 101 157 IPR003851 GO:0003677|GO:0006355
Dere01g2194 354 PANTHER CYCLIC DOF FACTOR 2 4 353 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2194 Dere-ChrDere01 35920621 35922505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2194 5 353 C2C2-Dof Transcription Factor Family AT5G39660 34.772 1.72e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere01g2194 zf-Dof 1.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2194 01 35920621 35922505 Dere01g2194 01 35920621 35922505 ECH