Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0063 ATGTCGGACGCAAAAGACCTTGCCATCAAGCTCTTCGGGAAGACGATCTCGCTGCCGGATATCCCGGATGTGTCCAGAGACTCTGCCGGAGCTCCGGAATACACTTCTGGGGACATTCTTGATGGTTGTATTGATCGGAATCTTGCTTCTTCTGTCTCCAACTCTTCGCTGGACTCCAATACGTTCGGGGATGGAGAAGAGAAAGAGCAAGAAGAGACTGACAAGGACACATTTGGAGGAAAACCACTTGAAGATAGGAGGGAAGATGGAGGCCCCACCCAGTCTACAGAAGTGTTCACTGATCCAAATGCAGCCTCAAGGACGCATGAAGATTCTATTACAACCTCAATTGAGAAGGAAGCAACTACACTGAAGACCTCAAAAACTGAAGAACAGAGCGAGACATGTAATTCACAGGAGAAGACACTGAAAAAGCCAGACAAAATACTGCCTTGCCCCCGCTGTAGTAGCATGGAAACCAAATTCTGCTACTACAACAATTACAATGTCAACCAACCCCGGCACTTCTGCAAGAATTGCCAGAGATACTGGACAGCTGGTGGGACCATGAGAAACATGCCGGTGGGTGCTGGTCGCCGGAAGAGCAAGTACTCTACTTCTCACTACCGTCAGATAACTGTCTCTGAAGCACTACAGAATGCTCCTGCAGACGTAACATATGGAGTCCATCATCCTTCCTTGAAATCTAATGGCCCAGAGACACCCTTGATTGAATCAATGGCATTTGTTTTGAACCTTGCTGATAAAACAACGCATAACTGCACAATAAATGGATTTCATAGACCCCAAAACATAGGAATTCCTTTTCCATATGCCAGTGAAGAAAAAGGAAATGATCATTTGAATAATTTCTCTGCAACATCAACAGAATTAATGGAAGATGCAAGGGTCAGTAAGTCCCAAGAACAAGTAATGCAGAATTGCCAGAGCTTCCCCCCTCAAATTCCCTCCTTTTCTGGGCCCCCTTGGCCTTCCCCATGGAATCTGGTGCCGTGGAGCTCTGCACCACCACCACCACCTGTGTTTTGCCCTCCGGGGTTTACTGTGCCTTTCAATCCTGCAGCAGCTTATTGGGGTTGTACTGTATCAGGTGCTTGGACCATCCCATGGTTAGTGCAGCCATCATCACCAAAAAGTGTAGACCCTAACAATGGTCCTGACTCTCCAACCTTGGGTAAACATTCAAGGGAAGGAAACATGCTCAAATCAAATGACTCAAGGGGGGAGTATGGCCATAACAAGGAAAATCATAAATGCCTTCAGGTTCCGAAAACGTCGAGGATTGATGAACCCAGGGAAGCAGCAAGAAGCTCCATATGGACAACATTGGGGATTAAATCTGATGAGGTTCCCTCAGTTCACAAGGGAGGACTCTTTAAGGCATTCCCATCAAAGAATAATGGAAAAAATCACCCAATGCAAACTTCACCATTCTTGCTGGCCAATCCAGCAGCATTGTCTAGGTCATTCAACTTTCATGAGACCTCGTAA 1512 0.4643 MSDAKDLAIKLFGKTISLPDIPDVSRDSAGAPEYTSGDILDGCIDRNLASSVSNSSLDSNTFGDGEEKEQEETDKDTFGGKPLEDRREDGGPTQSTEVFTDPNAASRTHEDSITTSIEKEATTLKTSKTEEQSETCNSQEKTLKKPDKILPCPRCSSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNMPVGAGRRKSKYSTSHYRQITVSEALQNAPADVTYGVHHPSLKSNGPETPLIESMAFVLNLADKTTHNCTINGFHRPQNIGIPFPYASEEKGNDHLNNFSATSTELMEDARVSKSQEQVMQNCQSFPPQIPSFSGPPWPSPWNLVPWSSAPPPPPVFCPPGFTVPFNPAAAYWGCTVSGAWTIPWLVQPSSPKSVDPNNGPDSPTLGKHSREGNMLKSNDSRGEYGHNKENHKCLQVPKTSRIDEPREAARSSIWTTLGIKSDEVPSVHKGGLFKAFPSKNNGKNHPMQTSPFLLANPAALSRSFNFHETS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0063 503 MobiDBLite consensus disorder prediction 18 142 - -
Dere01g0063 503 MobiDBLite consensus disorder prediction 383 397 - -
Dere01g0063 503 MobiDBLite consensus disorder prediction 47 61 - -
Dere01g0063 503 ProSiteProfiles Zinc finger Dof-type profile. 150 204 IPR003851 GO:0003677|GO:0006355
Dere01g0063 503 MobiDBLite consensus disorder prediction 383 425 - -
Dere01g0063 503 MobiDBLite consensus disorder prediction 405 425 - -
Dere01g0063 503 ProSitePatterns Zinc finger Dof-type signature. 152 188 IPR003851 GO:0003677|GO:0006355
Dere01g0063 503 MobiDBLite consensus disorder prediction 93 133 - -
Dere01g0063 503 Pfam Dof domain, zinc finger 147 203 IPR003851 GO:0003677|GO:0006355
Dere01g0063 503 MobiDBLite consensus disorder prediction 62 92 - -
Dere01g0063 503 PANTHER CYCLIC DOF FACTOR 2 5 503 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0063 Dere-ChrDere01 3786541 3789344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0063 6 503 C2C2-Dof Transcription Factor Family AT5G39660 41.188 3.89e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere01g0063 zf-Dof 5.5e-31 No_clan