Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02050 ATGCAGGAAATACACTCCATAGGAGGAGCCAGGTTCTTCTCCGGCGCCGCCGACCGGAGGCTCCGTCCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGCGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGTGGCTGCCGCAAGTCCAAGCGCTCCTCCAAACCCCCCTCCGACTCCGCCCCTCCTCCCCCGCCGGACCCCGACCGCTCCAGCAGCGACAGCTCCACCCTCACCgccacagccaccacccacagccacagccacagccacaTGCAACACTCCGTTTTGGAGACCACTCCTCTGGACCAACCCTCAGGAACGGACTCCGCTGCTATTTTCTCGGAGATTGGGCCTTTCACTGCTTCTTCTTCGAACGACTCCTTGGCCTTCGCCTTCCCCGATGCGTCGTCGTTTCCGTGGCAGCACCCCAAGCGTGACGAGGAATTCAGCTCCTTGCTCGATCACACCGTTGATTTCTCCGCGAAACCCCCCCACGCTGCATTCGGACCCTTGGATTGGCACGCCACCGCAGATCAAGGTTTGTTCGACCTTCCTAACGCCGTTGATCACGCTTACTGGACCCACTCTCACTGGTCTGACAATGACAATTCTACTCTCTTTCATCTCCCCTGA 735 0.5755 MQEIHSIGGARFFSGAADRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPPSDSAPPPPPDPDRSSSDSSTLTATATTHSHSHSHMQHSVLETTPLDQPSGTDSAAIFSEIGPFTASSSNDSLAFAFPDASSFPWQHPKRDEEFSSLLDHTVDFSAKPPHAAFGPLDWHATADQGLFDLPNAVDHAYWTHSHWSDNDNSTLFHLP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02050 244 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Cca11g02050 244 PANTHER DOF ZINC FINGER PROTEIN 4 17 167 - -
Cca11g02050 244 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 167 IPR045174 GO:0003700|GO:0006355
Cca11g02050 244 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Cca11g02050 244 MobiDBLite consensus disorder prediction 76 144 - -
Cca11g02050 244 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Cca11g02050 244 MobiDBLite consensus disorder prediction 104 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02050 Cca-Chr11 46046471 46047521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02050 18 241 C2C2-Dof Transcription Factor Family AT5G60850 42.701 4.84e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca11g02050 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02050 - - ccaj:109809077 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02050 11 46046471 46047521 Cca03g00693 03 12777917 12779344 PCT