Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02044 atggggaggggaagggtggaattgaagagaatcgagaacaagatcaataggcaagtaacgttctcaaagagaaggtctggtttgttcaagaaagcacgcgagatctctctgctttgcgacgctgaactcgctctcattgtcttctccaccagacccaagcttttcgagtactctaCCCAACCTTCTACGGAAAGAATTCTTGAACGGTATGAGAGGTATTCGTATGCGGAGAGGCAGGTTGGTACAAATGATCAAGCACCAAATGAAAACTGGGCTACAGAACACCAAAAGCTCAAGGCTAGGATGGAGGTACTACAGCGAAATCAAAGGAATTGTATGGGAGAAGAGCTGGAAAGCTTAAATCTCAGAGGACTTCAGAGTTTGGAACAACAACTTGATTCCGCTCTCAAACATATTAGATCAAGAAAGAACCAAGCCATGAATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTCCGAGAACGTAACAACTTGCTCGCCAAGGAGGTAATGACGTTTTTGTTTGATAACAGCTCATGCAATGCAATTTGGATTTCAAATATCACACACAGGTACAGTACATGA 591 0.2927 MGRGRVELKRIENKINRQVTFSKRRSGLFKKAREISLLCDAELALIVFSTRPKLFEYSTQPSTERILERYERYSYAERQVGTNDQAPNENWATEHQKLKARMEVLQRNQRNCMGEELESLNLRGLQSLEQQLDSALKHIRSRKNQAMNESISELQKKDKALRERNNLLAKEVMTFLFDNSSCNAIWISNITHRYST 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02044 196 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Cca11g02044 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
Cca11g02044 196 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Cca11g02044 196 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca11g02044 196 Coils Coil 88 108 - -
Cca11g02044 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca11g02044 196 Coils Coil 125 171 - -
Cca11g02044 196 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Cca11g02044 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca11g02044 196 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca11g02044 196 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca11g02044 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca11g02044 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca11g02044 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca11g02044 196 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 172 - -
Cca11g02044 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02044 Cca-Chr11 46007708 46015437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02044 1 172 MADS-box Gene Family AT1G26310 64.943 7.16e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca11g02044 K-box 1.2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00686 03 12567539 12571832 Cca11g02044 11 46007708 46015437 ECH
Cca07g02283 07 51349164 51359559 Cca11g02044 11 46007708 46015437 ECH
Cca09g00342 09 8045052 8060440 Cca11g02044 11 46007708 46015437 ECH
Cca11g02044 11 46007708 46015437 Cca11g02044 11 46007708 46015437 ECH
Cca11g02044 11 46007708 46015437 Cca03g00684 03 12518303 12530873 PCT