Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01999 ATGGTGAAAATTTGCGGAATTGGAGCCGGGTACGTAGGGGGTCCTACAATGTCTGTGATAGCCCTCAAGTGCCCCTCAATTGAGGTGGCAGTGGTTGACATCTCTCACTCTCGCATATCATCTTGGAACAGCAACAATCTCCCCATTTATGAGCCTGGCCTAGAAGAGGTGGTGAATCATTGCAGAGGAAAGAACCTCTTTTTCAGCACCGATGTGGAAAAGCATGTGAATGAGGCAGACATAGTTTTTGTCTCAGTGAACACCCCAACAAAAATCAGAGGCCTTGGAGCTGGCAAGGCCACAGACTTGGCTTATTGGGAGAGTGCAGCTAGGATGATTGCTGATGTGTCCAAGTCAAACAAAATTGTTGTTGAGAAATCCACTGTCCCAGTGAGAACTGCTGAGGCCATTGAGAAGATCCTAACTCACAATAGCAAGGGCACTATCAAGTTCCAAATCCTCTCAAATCCTGAGTTTCTCTCTGAGGGAACAGCTATTCAGGACCTTCTAAATCCTGATAGGGTTCTCATTGGAGGGAACCAAGACCCTGAAGGGTTAGAAGCAATCCAAAAACTGAAGGCTATTTATGCACATTGGGTGCCTCAAGATAGAATCATAACAACAAATCTGTGGTCAGCTGAACTCTCTAAGTTAGCTGACAATGCCTTTTTAGCACAAAGGATTTCATCTATCAATGCTATGTCAGCACTATGTGAGGCCACTGGGGCAGAAGTCTCACAAGTTTCTCATGCACTCAGCAAAAACACCAAAATTGGGCCCAAGTTTCTCAATGCTAGTGTTGGTTTTGGTGGCTCTTGCTTTCAAAAGGACATACTCAACTTGGTGTACATATGTGAGAGTAATGGCCTCATTGAAGTGGCAAATTACTGGAAAGAAGTGATCAAGGTGAATGACTACCAAAAGGGTCGGTTTGTGAAGAGGGTTGTGACATCCATGTTCAACACTGTTTCGGGTAAGAAGATTGCAATTCTGGGGTTTGCCTTCAAGAAGGACACTAGTGACACTAGGAAAACTCCTGCTATTGATGTTTGCAAAGGTCTTTTGGGTGATGACGCGTGCTTGAGCATTTATGATCCCCGAGTTACTGAGGAGCAGATTCAGAAGGATTTGTCAATGAGTTCTAGTGTTGTGAAACAGGTTAGTGTTGTTGGAGATGCTTATGAGGCAACTAAAGCATCTAAACCTGATATAAGTTTGGCTGTAAATCCCTGTCTAGTTGGCATATTCCTGAATCCTGAGAAAGGAGCCCTCGTTTTGAAAGGTGACTTGATTTGA 1296 0.4421 MVKICGIGAGYVGGPTMSVIALKCPSIEVAVVDISHSRISSWNSNNLPIYEPGLEEVVNHCRGKNLFFSTDVEKHVNEADIVFVSVNTPTKIRGLGAGKATDLAYWESAARMIADVSKSNKIVVEKSTVPVRTAEAIEKILTHNSKGTIKFQILSNPEFLSEGTAIQDLLNPDRVLIGGNQDPEGLEAIQKLKAIYAHWVPQDRIITTNLWSAELSKLADNAFLAQRISSINAMSALCEATGAEVSQVSHALSKNTKIGPKFLNASVGFGGSCFQKDILNLVYICESNGLIEVANYWKEVIKVNDYQKGRFVKRVVTSMFNTVSGKKIAILGFAFKKDTSDTRKTPAIDVCKGLLGDDACLSIYDPRVTEEQIQKDLSMSSSVVKQVSVVGDAYEATKASKPDISLAVNPCLVGIFLNPEKGALVLKGDLI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01999 431 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 329 399 IPR014027 GO:0016616|GO:0051287
Cca11g01999 431 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 211 310 IPR008927 -
Cca11g01999 431 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 211 305 IPR014026 GO:0016616|GO:0051287
Cca11g01999 431 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 316 399 IPR036220 -
Cca11g01999 431 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 187 IPR001732 GO:0016616|GO:0051287
Cca11g01999 431 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 386 IPR017476 GO:0016616
Cca11g01999 431 Gene3D - 210 241 - -
Cca11g01999 431 PIRSF UDPglc_GDPman_dh 2 409 IPR017476 GO:0016616
Cca11g01999 431 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 400 - -
Cca11g01999 431 Gene3D - 242 404 - -
Cca11g01999 431 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 215 IPR036291 -
Cca11g01999 431 PIRSF UDPglc_DH_euk 1 408 IPR028356 GO:0003979
Cca11g01999 431 SMART UDPG_MGDP_dh_C_a_2_a 329 414 IPR014027 GO:0016616|GO:0051287
Cca11g01999 431 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 400 IPR028356 GO:0003979
Cca11g01999 431 Gene3D - 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01999 Cca-Chr11 45419041 45421182 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00280 09 6611388 6612782 Cca11g01999 11 45419041 45421182 ECH
Cca11g01999 11 45419041 45421182 Cca11g01999 11 45419041 45421182 ECH