Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01264 ATGATCCAAGAACTGTTGGGTGGTGCTGGCCTCATAGCAGGAGAAAGAAAACCCTCCATTAATGGAGGAGGAGGAGGAGTTCACCTCTCAACTACACCACCCCCCTCTTCCACAGCCAATAATGTTACCCTCACATccaccacaacaaccaccaccactactactaccaccTCATCGGAAAACCAAAACCTGAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCGCGGCACTTCTGCAAGACGTGCCGCCGCTACTGGACCAAAGGCGGCGCTCTCCGAAACGTCCCCATCGGCGGCGGCTGCCGGAAAAACAAGAACATCGGAGTGTCGAACTCGGTGGCGAAGACAGCCTCAACCAAGATGAAAACCGTTGCATCTGAGCTTGGAAAATCACCAGGCTTCGGTGGATTCGAAGTGGAACATGAAATTCCACCACCAAGCCAAATCCTTTGGGGTTCCCCGCAAAACACTCACCTTCTGGCTTTGCTGAGAGCTACACACAATCCAAACCCTAACCCTAACCCTAGTCCCATGTCCGTTAAGGAAGAAGGGAACCTAATGGGGCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGTTGCTGAATCACCGAACCTTAGGGTATGACGCGGTTGCGCAAGTTCCTTCGCTCGGTCTCTTTGGGAGAAACAATCAAGATCATGGGGGCTTCCTACATGGGGAACATCACAACAGTGGAATTCAAGAGCTTTACCAGAAGTTAAGGTCATCATCGGTTAATAATTATTGCAGTGACAATTCGTCGCAAGTGTTTATGGGGAACATGGCTTCTAACTATTCCTCTTCTTTGTCCAACAACATTTTGGAGACAACTTCGGTTGCTGGGGGTGAATTCGGATACTGGAATAATGGTCCAACCTTTTCTTGGTCTGATCTTCCAACCACGAATGGCGCTGGTGCATATCCGTAA 987 0.4813 MIQELLGGAGLIAGERKPSINGGGGGVHLSTTPPPSSTANNVTLTSTTTTTTTTTTTSSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVSNSVAKTASTKMKTVASELGKSPGFGGFEVEHEIPPPSQILWGSPQNTHLLALLRATHNPNPNPNPSPMSVKEEGNLMGHMVSTEPLVSNALLNHRTLGYDAVAQVPSLGLFGRNNQDHGGFLHGEHHNSGIQELYQKLRSSSVNNYCSDNSSQVFMGNMASNYSSSLSNNILETTSVAGGEFGYWNNGPTFSWSDLPTTNGAGAYP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01264 328 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 18 324 - -
Cca11g01264 328 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
Cca11g01264 328 MobiDBLite consensus disorder prediction 13 64 - -
Cca11g01264 328 MobiDBLite consensus disorder prediction 30 64 - -
Cca11g01264 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 324 IPR045174 GO:0003700|GO:0006355
Cca11g01264 328 Pfam Dof domain, zinc finger 62 118 IPR003851 GO:0003677|GO:0006355
Cca11g01264 328 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01264 Cca-Chr11 32534906 32536488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01264 49 166 C2C2-Dof Transcription Factor Family AT1G51700 53.659 4.52e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca11g01264 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01264 - - vra:106766838 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01426 06 29116444 29118155 Cca11g01264 11 32534906 32536488 PCT