Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01253 ATGCCATCGTCGAATTCCGGCGAGAGCCGCAGAGCGGCCAAGCCTCAAACCTCCGCCGGAGCTCCTCCTCCGCCGGAGCAAGAGAACCTCCCCTGCCCCCGCTGCGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCGCGCCACTTCTGCAAGGCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGCGACATCCCCGTCGGAGGCGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCCACCACTCCGCCACGTCATCGTCCTCCTCCTCGATGACGTCAGCGCCGGACCCTACTGTACCTGCATTGGCACCCATCGCCACGAGCCAAGGGGGGTCCATGCAGTTCGGAGTTGACGGCGACGTCAAACAGAGTAACGTCAGCGTCTGCGGGAGCTTCACTTCGTTGCTGAACAACACCCAGGGCTCTGGCTTTCTGGCCCTCGGCgggtttgggcttgggcttggacacggcttcgacgacatgggcttcgggattgggaggtcgggttgggcCTTCCCTGGAATGGTCGACGGGGGTAACATTGGCGGCGGCGTTGCGGCTTCCGGCGTCAACACGTGGCAGTTAGAAGGTGGCGAGGGTGGGTTCGTTGGTGGAGATTGCTTCTCTTGGCCTGGACTTGCCATTTCAACACCGGGGAATGGTCTTAAATGA 699 0.5665 MPSSNSGESRRAAKPQTSAGAPPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHSATSSSSSSMTSAPDPTVPALAPIATSQGGSMQFGVDGDVKQSNVSVCGSFTSLLNNTQGSGFLALGGFGLGLGHGFDDMGFGIGRSGWAFPGMVDGGNIGGGVAASGVNTWQLEGGEGGFVGGDCFSWPGLAISTPGNGLK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01253 232 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 229 - -
Cca11g01253 232 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Cca11g01253 232 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Cca11g01253 232 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 229 IPR045174 GO:0003700|GO:0006355
Cca11g01253 232 MobiDBLite consensus disorder prediction 1 32 - -
Cca11g01253 232 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Cca11g01253 232 MobiDBLite consensus disorder prediction 71 114 - -
Cca11g01253 232 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01253 Cca-Chr11 32177039 32178371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01253 1 232 C2C2-Dof Transcription Factor Family AT3G50410 51.383 5.57e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca11g01253 zf-Dof 7.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01253 - - gmx:778099 329.331