Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01894 ATGCTCATCATCATGCCAAAACACACATTCACAACACAAGTCACAAACCCCACATTAGATCTCATCAAAACAATGTCACCCCCACCATTTTTTTACCTTCTCTTTCTCTTCCTCTTAGCAGCACCATTACTCTTAGCTCAATCTCAATCTCAATCTCAAACTCCACCTTCTACTTCTACTCCTTCTCCTTCTGTTGCATGCAAAGGCACACTATATCCAAAACTATGCCGTTCCATCATCTCAGCCATTCGTTCCTCACCTTCTGACCCTTATGGCTACGGCAAGTTCTCCATAAAACAAAGCCTGAAACAGGCAAGGAAACTAGCCAAGGTGTTTGAGGACTTTCTCCAACGCCACCAATCATCATCATTGAACCATGCTGAGATTGCATCACTTGGTGACTGCAGAGATCTCAACCAACTCAACGTGGATTACTTGGTGTCAATCTCCGAGGAGCTGAAATCTGCTGGCTCATCAGACTCAGAACTTGTTGAGAAAATCGAGAGCTACCTCAGTGCTGTGGCCACGAACCACTACACGTGCTATGATGGGTTGGTTGTGACCAAAAGCAGCATTGCCAATGCTCTTGCCGTGCCACTCAAGGATGTGACGCAGTTGTACAGTGTGTCACTTGGGTTGGTCACTCAGGCTCTTGACAAAAACCTCAAGAGGAATAGGACCCGCAAACATGGTCTTCCCACCAAGGCCTTCAAGGTTAGGCAACCACTTGAGAAGCTCATCAAGCTTCTTCGCACAAAGTACAGTTGCTCCAAATCCAATTGTACAAGACCTGAAAGGATTCTTAAGGAAAGCGGAAGCCAAGGAATTTTATTACACGACTTTGTGATTGTGAGCCATTATGGAATAGACAACTACACCTCCATTGGAGAGGCTATTGCTGCTGCACCCAATAACACAAAGCCTGAAGATGGCTATTTTCTTGTCTATGTTAGAGAGGGATACTATGAGGAATATGTAGTTATTCCCAAAGAAAAGAAGAATATATTGCTAGTGGGAGATGGTATTAACAAGACTATCATCACAGGGAACCATAGTGTCATAGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTGCTGGAGAAAGATTTACAGCAGTGGATGTCACATTTAGAAACACAGCTGGACCTGAAAAGCACCAAGCAGTGGCAGTGAGGAACAATGCTGACCTCTCCACATTCTACCGTTGCAGCTTTGAAGGATACCAAGACACACTCTATGTTCACTCTTTGAGGCAATTCTTTAGGGAATGTGACATCTATGGCACTGTGGACTTCATTTTCGGCAACGCAGCAGTGGTCTTCCAAGACTGTAACATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCGAATCAAAACACTGGCATTTCAATCCAAAACTGCACAATTGATGCTGCACCAGACTTGGCAGCAAGCTTGAATTCGACGCCGAGTTACTTAGGCCGGCCGTGGAAGGTGTATTCAAGGACTGTCTATCTGCAGTCATACATTGGAGATGTAATTCATCCTGCTGGATGGCTAGAGTGGAATGGTACAGTTGGGTTAGACACCCTCTTTTATGGTGAGTTCAACAACTATGGACCTGGTTCTAACACAAGCAATAGAGTACAATGGCCTGGTTACTTTCTGTTGAATGCTACTCAAGCTTGGAACTTTACTGTCCTTAATTTTACTCTAGGAAATACATGGCTTCCTGACACAGATATTCCTTACACTGAAGGACTACTGAGATAG 1791 0.4428 MLIIMPKHTFTTQVTNPTLDLIKTMSPPPFFYLLFLFLLAAPLLLAQSQSQSQTPPSTSTPSPSVACKGTLYPKLCRSIISAIRSSPSDPYGYGKFSIKQSLKQARKLAKVFEDFLQRHQSSSLNHAEIASLGDCRDLNQLNVDYLVSISEELKSAGSSDSELVEKIESYLSAVATNHYTCYDGLVVTKSSIANALAVPLKDVTQLYSVSLGLVTQALDKNLKRNRTRKHGLPTKAFKVRQPLEKLIKLLRTKYSCSKSNCTRPERILKESGSQGILLHDFVIVSHYGIDNYTSIGEAIAAAPNNTKPEDGYFLVYVREGYYEEYVVIPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVAGERFTAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFFRECDIYGTVDFIFGNAAVVFQDCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAASLNSTPSYLGRPWKVYSRTVYLQSYIGDVIHPAGWLEWNGTVGLDTLFYGEFNNYGPGSNTSNRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01894 596 PANTHER PECTINESTERASE 31 594 - -
Cca10g01894 596 Pfam Plant invertase/pectin methylesterase inhibitor 66 212 IPR006501 GO:0004857
Cca10g01894 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 216 IPR035513 -
Cca10g01894 596 TIGRFAM PME_inhib: pectinesterase inhibitor domain 43 216 IPR006501 GO:0004857
Cca10g01894 596 Pfam Pectinesterase 282 579 IPR000070 GO:0030599|GO:0042545
Cca10g01894 596 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Cca10g01894 596 PANTHER PECTINESTERASE 31 594 - -
Cca10g01894 596 CDD PMEI-like_3 66 215 - -
Cca10g01894 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 217 IPR035513 -
Cca10g01894 596 SMART PMEI_2 58 213 IPR006501 GO:0004857
Cca10g01894 596 SUPERFAMILY Pectin lyase-like 281 593 IPR011050 -
Cca10g01894 596 Gene3D - 280 596 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01894 Cca-Chr10 36056783 36062729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01894 30 595 Carbohydrate Esterase AT3G10720 57.825 0.0 706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01894 10 36056783 36062729 Cca04g01751 04 31024803 31030779 PCT