Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01893 ATGTATCCCTTCAGATCCTACGGGAAAGTTGATGAGCACGAGCAAATGGTGTTGGAGGCAAGGAGAAAAACCCGAAAGAGAATCACAATCATAAGCTTGTCCTCAATAGTGCTAGCAGGTGTTGTGTTTGCTGCAGTATTTGGCATTGTTAGCACCACTCGTGACACCTCACAAGGTGTCAGTGATGCTCAATCTGTGAGCAATTCGGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGACTCGTGCTATAGCAGCCTTGGTTCTGTTGTGGACTCGGGGCAGGTTCGGCCTGAGGAGCTGTTCATGTTGTCAATGAAGGTGGCATTATCTGAAGTGTCCAAAGCTGTTGATTATTTCAGTGATCATGATCATGGTGTTTTCAAAGGGTTGAAGGGTGGCAGGAATAAGGAGGCTTTGAAAAATTGTAGGGAGCTTTTGGGTCTTGCACTTGATCATCTGAATAGCTCTTTGACATCCGGGGAAAACTCTTCACTTCTTGATGTTTTTGAGGATCTTCAAACGTGGATAAGTGCTGCAGGTACATATCAGCACACTTGCATTGAAGGCTTCGAAAATGAAAAAGTAGCACTTAAGTCAAGAGTAGTAAGCTATCTTAAAAACTCTACACAGTTCACAAGCAACAGTCTAGCCATCATCACCTGGATCAACAAGGCTGCAACCACACTGAACTTGCGGCGATTATTGAATTTACCTCATCAGAATGAAGCACCAGAATGGCTTCATCCAAAAGATAGGAAGCTGCTTCTAATAGAGGATTTGAAGAAAAAAGCTAACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAGAAGATTTCTGATGCACTTAGACATGTCCCTGATAAGAGTGACAAGAGAACTGTGATCTATGTGAAGAGAGGGGTTTACTATGAAAATGTGAGGGTAGAGAAGACCAAATGGAATGTGATGATTATTGGTGATGGTATGACTTCTACTATTGTGTCTGGAAGGCGTAACTTTGTGGATGGCACACCAACATTTTCAACAGCAACATTTGCTGTATTTGGAAGGAATTTCATAGCTAGAGATATGGGTTTTCGCAACACAGCTGGTCCACAGAAGCATCAAGCAGTGGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGTCACATTGATGCATATCAGGACACTCTCTATTCTCATTCCAACCGCCAATTCTACAGAGAATGCAACATTTATGGCACAGTTGATTTCATTTTTGGAAATTCTGCAGTTGTGATCCAAAACTGTAATATTAGGCCAAAGTTACCTATGCATGGCCAGCAGAACACAATCACAGCTCAGGGAAAATTTGACCCTAACATGAAAACTGGCATCTCCATTCAATATTGCAACATTTCACCCTTTGGAAACTTGAGTTCTGTCCAGACTTATCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTACATGAGATCCAGAATGGAAGGTTTTGTGAACTCCAATGGCTGGTTACCATGGACAGGGAACTCAGCACCAGACACCATTTTCTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTCAAGTGGAAGGGTTTGAGAAACATTACCAGTAAACAAGCCACAAAATTTACTATCAAGGCTTTTCTACAAGGAGACAGATGGATTTCTGCATCAGGTGCCCCATTTAAGTCTGATCTGTGA 1719 0.4223 MYPFRSYGKVDEHEQMVLEARRKTRKRITIISLSSIVLAGVVFAAVFGIVSTTRDTSQGVSDAQSVSNSVKAVCDVTLYKDSCYSSLGSVVDSGQVRPEELFMLSMKVALSEVSKAVDYFSDHDHGVFKGLKGGRNKEALKNCRELLGLALDHLNSSLTSGENSSLLDVFEDLQTWISAAGTYQHTCIEGFENEKVALKSRVVSYLKNSTQFTSNSLAIITWINKAATTLNLRRLLNLPHQNEAPEWLHPKDRKLLLIEDLKKKANIVVAKDGSGKYKKISDALRHVPDKSDKRTVIYVKRGVYYENVRVEKTKWNVMIIGDGMTSTIVSGRRNFVDGTPTFSTATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCHIDAYQDTLYSHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQNTITAQGKFDPNMKTGISIQYCNISPFGNLSSVQTYLGRPWKNYSTTVYMRSRMEGFVNSNGWLPWTGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRNITSKQATKFTIKAFLQGDRWISASGAPFKSDL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01893 572 Pfam Plant invertase/pectin methylesterase inhibitor 69 219 IPR006501 GO:0004857
Cca10g01893 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 223 IPR006501 GO:0004857
Cca10g01893 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 223 IPR035513 -
Cca10g01893 572 SUPERFAMILY Pectin lyase-like 264 569 IPR011050 -
Cca10g01893 572 Gene3D - 261 572 IPR012334 -
Cca10g01893 572 CDD PMEI-like_3 72 225 - -
Cca10g01893 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 224 IPR035513 -
Cca10g01893 572 PANTHER PECTINESTERASE 5 570 - -
Cca10g01893 572 Pfam Pectinesterase 266 558 IPR000070 GO:0030599|GO:0042545
Cca10g01893 572 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Cca10g01893 572 PANTHER PECTINESTERASE 5 570 - -
Cca10g01893 572 SMART PMEI_2 65 219 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01893 Cca-Chr10 36053175 36056352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01893 7 572 Carbohydrate Esterase AT3G10710 57.193 0.0 676
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01893 10 36053175 36056352 Cca04g01750 04 31020606 31024395 PCT