Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01892 ATGAAAAACTCGGTGACATCACAAGCAATGAACACCTCGAGTGATCACAACAAGATGGCTGCTGGTGTTGCTGTCTTCGACCCTTCATCGAGGAACAGTgaagaagaaacaagggttgaagaagaggaagaagaggagaaagaGCTAACGATCGAGGAGCTTGAGACGAGGATGTGGAGGGACCGCATGTTGCTGAGGAAGCTGAAGGATGACAGAAGGGAGAGAGAGAAAGGGCAAACGGTGGAGATGCTGAAGAAAAAAGCCATGACTCGTGCACAAGACACTGTGCTGAAGAACATGCTGAAGATGATGGAGGTTTGTGATGTACGAGGCTTCGTTTATGGCATCATTCCCGAGAAGGGGAAGCCAGTGAGTGGTGCCTCTGATAACCTTCGTGCTTGGTGGAAGGATAGGGTCAGGTTTGATCGTAATGGTCCTGCTGCAATGCTTAGGTATGAAGAAGAAAGTGGGTTTGATGAGCAGATCAACGATTCAttcagtggagacccatcaacccattacgccttgtgtgatctgccagacacaactcttgggtcactcttgtcatgtctgatgcagcactgtgatcccccccagaggaggtacccattggacaagggccttacccctccatggtggcccactgggcaggagacgtggtggcccgagttgggcttttcggtggacccaggcccacctccctacaagaagccccatgacctgaagaaggtttggaagatgtgtgtgctcactgcagtcataaaacacatgtcccctgacatcactaggatcaaaaacattgtgcgccactctaggacccttcaggacaagctcactgccaaagaaactgctatttggaccgctgtggtcaaacgtgaagagtcaattgccaaaaaattgcaccctcacttgttcccaTCATCACTACCTTTGAGAAGGGCTAACTTGTTCCTTGAGACAAATGGTTATGGCATTGAACCAAGTGGTGCTAGAAATTTTCTTGGAGGCCAAAATAACACCACCAATAATGATATACTCTTAGCAAGTGCTGGTGCTAGAAATTTTTTTGGGGGGCAAAAtaaccctaatcctaacccaaaccttaaccataaccctaagcctaacccACCACCAGCCACCAATAATGTTACTAATGCTGGTGCTAGGAATTTCCTTGGGAGCCAAAATAATCCACCACCAACCACCAATGTTGCCGATGATGGTGCTAGGAAATTTCTTGGGGGGCAAAATAATCAATCACCAACCACCAATGTTGCTAATGGTGGTGCTAGAAGTTTTGTGATGGGGCAAAATAACCCATCACCAACCACCAATGTTGCTAATGGTAGTGCTAGAAATTTTCTGGAGGCACAAAACAACCCATCACCAACCACCAATGTTGCTAATGGTAGTGCTGGAAACTTTCTGGAGGCACAAAACAACCCATCACCAACCACCAAAGGTAGTGCTAAAATTTTTCTGGCGGGGAACAATAATCCACCATCAACCACCAGTGTTGCTAATGTTGGTGCTAAACGTTTTCTTGGGGGGCAAAACAGTCCACCACCAACTACCAATGTTGCTCAAGGTGGTGCTAGAAGTTTTCTTGGGGGCCAAAATAATCCACTTCCAACCACCAATGTTGTTAATGGTAATAACAACAATAGTATGGTTGCAATGAACAATGGCATTGTTATGCCACCGGATAATGGTGGTAATAAGAGAAAGGCTGGGGCTGTTCAAGATATAACAATTCCTCATGAGGCCTATTCCTGCCACAACCTTCAATGCCCTTATCATGATGAGACCCCCTTTGGGTTCAATGACAGGAATGCGAGGAACAATCACCAGTTAACATGCAGATACAAAGGCAAAAGCCCTGTGCAAGTGGTTGTTGATGAGTCAATGTCTCAGATTGGAAGTGGCAATAACCCTAATATAATGCCTCTTGGTCAACCTAACCACACTGCTGCACCAATTGTGAATCAAAATCAGGCTCTCAGTAATGGTCAACCAAGGCACACTGCCACACCAGGTGTGAATCAAAATCAGACTCTTCCTGTTGGTCAACCTAGGCACACTACTGTTGCACCAAGTGTGAATCAAATTCAGAAAGCTACTATTAACAGTGACAGTCATGAAGAAATGAATATGGGGTCAGGTTTGATGCACAACAACATGAATGTTCAGCAGAACAAATCCACAAGTGCTGGCAACAACTTGATTAATGTTCCTCTAGCAAGCCAAAACCAGCAGGTGCAAAATGTTCAGCCTCATGTGGACGCGAATTTATTTGGAGAAAGTGTCGATAGAGCCAATGGCTACAAGCTGGAATCTGAAGTACTCAATGTCCCAATGCAGCATGCAAGTGTCTCAACTCCAATAGATCCTCCCTATGAATGGGATACATATAATCCCCAATCTGATGCTTCTGCTTTCAACTATGGATTCATGGACTTTCCCTTGTTGACAACAACTGGCCAAGATTATCTTTGGCTATACAACTAA 2508 0.3529 MKNSVTSQAMNTSSDHNKMAAGVAVFDPSSRNSEEETRVEEEEEEEKELTIEELETRMWRDRMLLRKLKDDRREREKGQTVEMLKKKAMTRAQDTVLKNMLKMMEVCDVRGFVYGIIPEKGKPVSGASDNLRAWWKDRVRFDRNGPAAMLRYEEESGFDEQINDSFSGDPSTHYALCDLPDTTLGSLLSCLMQHCDPPQRRYPLDKGLTPPWWPTGQETWWPELGFSVDPGPPPYKKPHDLKKVWKMCVLTAVIKHMSPDITRIKNIVRHSRTLQDKLTAKETAIWTAVVKREESIAKKLHPHLFPSSLPLRRANLFLETNGYGIEPSGARNFLGGQNNTTNNDILLASAGARNFFGGQNNPNPNPNLNHNPKPNPPPATNNVTNAGARNFLGSQNNPPPTTNVADDGARKFLGGQNNQSPTTNVANGGARSFVMGQNNPSPTTNVANGSARNFLEAQNNPSPTTNVANGSAGNFLEAQNNPSPTTKGSAKIFLAGNNNPPSTTSVANVGAKRFLGGQNSPPPTTNVAQGGARSFLGGQNNPLPTTNVVNGNNNNSMVAMNNGIVMPPDNGGNKRKAGAVQDITIPHEAYSCHNLQCPYHDETPFGFNDRNARNNHQLTCRYKGKSPVQVVVDESMSQIGSGNNPNIMPLGQPNHTAAPIVNQNQALSNGQPRHTATPGVNQNQTLPVGQPRHTTVAPSVNQIQKATINSDSHEEMNMGSGLMHNNMNVQQNKSTSAGNNLINVPLASQNQQVQNVQPHVDANLFGESVDRANGYKLESEVLNVPMQHASVSTPIDPPYEWDTYNPQSDASAFNYGFMDFPLLTTTGQDYLWLYN 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01892 835 MobiDBLite consensus disorder prediction 518 544 - -
Cca10g01892 835 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 32 308 - -
Cca10g01892 835 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 571 754 - -
Cca10g01892 835 Coils Coil 32 57 - -
Cca10g01892 835 MobiDBLite consensus disorder prediction 380 403 - -
Cca10g01892 835 MobiDBLite consensus disorder prediction 1 48 - -
Cca10g01892 835 MobiDBLite consensus disorder prediction 353 430 - -
Cca10g01892 835 MobiDBLite consensus disorder prediction 458 487 - -
Cca10g01892 835 MobiDBLite consensus disorder prediction 1 18 - -
Cca10g01892 835 Gene3D - 79 153 IPR023278 GO:0003700|GO:0005634
Cca10g01892 835 Gene3D - 171 304 IPR023278 GO:0003700|GO:0005634
Cca10g01892 835 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 571 754 IPR006957 GO:0005634
Cca10g01892 835 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 32 308 IPR006957 GO:0005634
Cca10g01892 835 Pfam Ethylene insensitive 3 52 294 IPR006957 GO:0005634
Cca10g01892 835 MobiDBLite consensus disorder prediction 517 544 - -
Cca10g01892 835 MobiDBLite consensus disorder prediction 413 430 - -
Cca10g01892 835 SUPERFAMILY DNA-binding domain of EIN3-like 174 296 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01892 Cca-Chr10 36031501 36037918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01892 33 306 EIL Transcription Factor Family AT2G27050 58.363 2.14e-114 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Cca10g01892 EIN3 1.1e-108 No_clan