Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01882 ATGGAAGAAGGGTTAGGGCAAAACTCAGTTCCTCCACAAGGCCCAATTGACAAGTCCAGGATTCTGGATGTTAAACCTTTAAGGAGTTTGATTCCTATTTTCTCAATGGCTTCTCAAGCTTCACCCTCTGCCCAGTATCCATCTGGGTTTTCCCCATTTTTCCCATTTGGTGCACCTCAGCAAACTCCAACAGGGGGCACAACAGGGGGTGCTGCCACACCTACTCCAATAAGGGCATATAGAAGCCCCCTAGGGGCAGGAGACACTGGTTCAACAATGGAGGGGTTCACTGATCAAGATACTTATGGGAAGAAAAAACGTGGATCGCCACAACCGCGCCGTGCCGCCAAATCATCTGTGGATAAGCCTAAGAAAAGTCAAGAGCCACCTGTTGATTTGGGTGATTTGGTTGGTATTAGCCCTGCCCAACGAGATGATGGTAGCCGTGAAGTGGTTAATCTTGTGCTCATGTCATTTGATGCGCTTCGAAGAAGGCTATGCCAGCTTGAAGAGGCCAAGGAATTGAGCTCGGGTTCAATCAAGCGTGCAGATTTGAAAGCTTGCAATACTTTGATGACCAGGGGAATTCGAACAAACATGAGGAAGAGAATAGGATCAGTTCCGGGGGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAATTGTGTATTGCAGGTTTGCATGCTCCCTCCATGGGTGGAATTGATGCCATGCATATCAGGGGTGAGTTTGAGGAGGAAACTCTGGCTGTGAGCATTGTTTCATCGGGAGAATatgatgatgatgctgaggatagtgatgTTATAATTTATACTGGTCAGGGAGGGAACTTCTTCAAGAAAGATAAGCACACTATTGATCAGAAGCTTCATAGGGGTAATCTTGCTTTGGATAGGAGTTCGCGACAACACAATGAAGTGAGAGTCATCCGGGGCATGAGAGATGGTGCAAATCCAAATTCAAAGATCTATGTCTATGATGGTCTGTATAAAATCCAAGATTCATGGATAGAGAAAGCGAAAGGTGGCGGTGGTGTATTTAAGTATAAGTTGATTAGAACGCCAGGACAGCCTAGTGCTTTTTCTGTTTGGAAATCAGTTCAGAAGTGGAAATCTGGCTCCTCTGAAAGGACTGGTTTTATTCTTGCAGACATTTCTGCTGGAGCTGAGAGTATTCCTGTATCACTTGTCAATGAGGTTGATAATGTGAAGATGCCTACTCAGTTCAATTATTTCCATTCTCTTAGACATCCAAAATCGTTCAGTTTAATGAAGCCTTCACATGGGTGCGCCTGTACAAAAGCATGTGTCCCGGGTGATTTGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCATATACTGGCAGTGGCATTCTGGTGGGCCGGAAGCAATTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAACCGAGTATCCCAAACTGGTTTAAAGCACCACATGGAGGTGTTCAAAACAAAGAATAGAGGGTGGGGTCTTCGATCTCTGGATCCTATTCGTGCAGGTACTTTTATTTGTGAATATGCTGGAGAAGTTGTTGACAGAGCCAAGGTAAGTCAGCTTGTGAGGGAAGGAGATGAGTATATTTTTGATACAACCCGTATTTATGGTCAATTCAAGTGGAATTATGAGCCTAGGTTATTGGAAGAAATCGGCCCGAATGAAGACTCTAGTGAGGATTATGCCATGCCGTATCCTTTAATTATAAGTGCCAAGAATTTTGGGAATGTGGCTAGATTTATGAATCATAGCTGTTCCCCAACTGTTTTCTGGCAGCCTGTTGTATATGAAGAAAACAACCAATCCTACCTCCATGTTGCATTTTTTGCACTCAGACACATTCCGCCAATGACAGAGTTAACATATGATTATGGATTTGCCCGATCTGATCATGCTGAGGGTAGCAGTGCAGCGAAAGGGAGAAAGAAATGCTTATGTGGATCATCTAAATGCCGTGGTTCTTTTGGTTAA 2010 0.4358 MEEGLGQNSVPPQGPIDKSRILDVKPLRSLIPIFSMASQASPSAQYPSGFSPFFPFGAPQQTPTGGTTGGAATPTPIRAYRSPLGAGDTGSTMEGFTDQDTYGKKKRGSPQPRRAAKSSVDKPKKSQEPPVDLGDLVGISPAQRDDGSREVVNLVLMSFDALRRRLCQLEEAKELSSGSIKRADLKACNTLMTRGIRTNMRKRIGSVPGVEIGDIFFFRMELCIAGLHAPSMGGIDAMHIRGEFEEETLAVSIVSSGEYDDDAEDSDVIIYTGQGGNFFKKDKHTIDQKLHRGNLALDRSSRQHNEVRVIRGMRDGANPNSKIYVYDGLYKIQDSWIEKAKGGGGVFKYKLIRTPGQPSAFSVWKSVQKWKSGSSERTGFILADISAGAESIPVSLVNEVDNVKMPTQFNYFHSLRHPKSFSLMKPSHGCACTKACVPGDLNCSCIRRNEGDFPYTGSGILVGRKQLVHECGPTCQCFPNCKNRVSQTGLKHHMEVFKTKNRGWGLRSLDPIRAGTFICEYAGEVVDRAKVSQLVREGDEYIFDTTRIYGQFKWNYEPRLLEEIGPNEDSSEDYAMPYPLIISAKNFGNVARFMNHSCSPTVFWQPVVYEENNQSYLHVAFFALRHIPPMTELTYDYGFARSDHAEGSSAAKGRKKCLCGSSKCRGSFG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01882 669 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 67 669 IPR025794 GO:0016571
Cca10g01882 669 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g01882 669 SUPERFAMILY PUA domain-like 187 376 IPR015947 -
Cca10g01882 669 MobiDBLite consensus disorder prediction 55 71 - -
Cca10g01882 669 Pfam Pre-SET motif 385 484 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca10g01882 669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 667 - -
Cca10g01882 669 SMART set_7 492 644 IPR001214 GO:0005515
Cca10g01882 669 ProSiteProfiles YDG domain profile. 205 353 IPR003105 -
Cca10g01882 669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 667 - -
Cca10g01882 669 Pfam SAD/SRA domain 204 357 IPR003105 -
Cca10g01882 669 ProSiteProfiles Post-SET domain profile. 653 669 IPR003616 -
Cca10g01882 669 SMART preset_2 382 476 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca10g01882 669 Pfam SET domain 503 638 IPR001214 GO:0005515
Cca10g01882 669 SUPERFAMILY SET domain 391 666 IPR046341 -
Cca10g01882 669 Gene3D SET domain 374 668 IPR046341 -
Cca10g01882 669 ProSiteProfiles SET domain profile. 492 638 IPR001214 GO:0005515
Cca10g01882 669 SMART G9a_1 200 357 IPR003105 -
Cca10g01882 669 Gene3D - 187 373 IPR036987 -
Cca10g01882 669 MobiDBLite consensus disorder prediction 51 142 - -
Cca10g01882 669 ProSiteProfiles Pre-SET domain profile. 428 489 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01882 Cca-Chr10 35695331 35699974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01882 6 669 Su(var)3-9 homologs AT1G73100 51.237 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca10g01882 SAD_SRA 4.5e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01882 10 35695331 35699974 Cca04g01741 04 30408559 30410907 PCT