Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01878 ATGAGTCAAATGACAAATGAGGTTGATGACAATGTGCACCGCAATGATCAGACCAGGTCACAGTTAAATGATGAGGGTAATGGAGATGTTGTTCTGAAGAAAGGGCCATGGACATCTGCTGAAGATGCTATTTTGGTGAACTATGTCAACAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGTACTCAGGCCTGTCTCGTTGTGGAAAAAGTTGTCGATTGCGATGGGCCAATCACCTAAGGCCAAATTTAAAAAAAGGGGCTTTTACTGCACAAGAGGAGCGGTTGATTGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCGCACTTGCCTGGTCGTACAGATAACGAAATTAAAAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCAGGCTTGCCACTTTATCCTCCAGAAGTATTTTTGCAAGCATTTAAAGAGAGCAAGCATGGCCAAGGCACTAGTGGAATCAGTGATGGTGATAATAGGCATCAAGATTTCTTGGATAAAAACAATTATGAGATACATGATGCAGTATTTGACAGTTTGAAGGAAAATCAGGGAATCTTACCTTATGTGCCTGAGCTTCCTAATATTTCTGCTAATAGCATTCTGCCAAATGGTCTTGGTTCTCCTCCATATTGTAATTTTGTGCCATCAACATTACCTAATCATCTTCGAGAGTCAACAATGTCTTTTCTTGGTTCCAGTGGATTGAGCAGGAATGAGTTTTATCCATTTGACCATATCAAGGATAATACTTCTGATAAGATTGCAGATTCATTTGGATTGCATTCTCCCCTTGATCGTGGTGCCTCCTCACATGGTTCAATTTGTTACAGCCATTCACTATCAAATGGCAATTCCTCTACTTCTAAGCTGACTACTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACCGAATTTGGTAGTTGGGGCACCTCTCCCCCACCTCCATTGAATGAGTCTGCTGATGTTTTCATTCATTCTCAGCCACCTAATGCACTAGACTCAGGTTGTTCTTCACCACATAACAGTGGCTTGCTTGATGCATTAGTTTATCAGGCAAAGACTCTTAGTTCAAAGAATAATTGTTCTGACAAGAGTTCAAATTCATCTGTTGCAACCCCTGGTGACATAGCTGAGAGTTCCGCTTTGAACATGTATGCAACAGAATGGGAGGATTATGCTGACCCTGTATCTCCCTTTTGTGCAACTTCAATCCTGAATGAGTGTCCTGCTGTTAGCACCAATGGAAACTCATGGGATGAATGGGAATCTTTTCAGACCATTACTGGCAACAACAATGTGAAAATGCAGTCAGTTGACCAGGTATGGGCCCCAAAGAGTGAGAATCAATACATGTCTAATCTCACTTGGCCAGATGTCTTGCTAACTTCAGAATGGCACGACCTATATTCTGAAAATGGCGTGAACCAAACCATCATGACCGATGCTAGTGATGATTTTAGCAGACAGTAA 1515 0.4277 MSQMTNEVDDNVHRNDQTRSQLNDEGNGDVVLKKGPWTSAEDAILVNYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAQEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVFLQAFKESKHGQGTSGISDGDNRHQDFLDKNNYEIHDAVFDSLKENQGILPYVPELPNISANSILPNGLGSPPYCNFVPSTLPNHLRESTMSFLGSSGLSRNEFYPFDHIKDNTSDKIADSFGLHSPLDRGASSHGSICYSHSLSNGNSSTSKLTTEAVKSELPSLQYPETEFGSWGTSPPPPLNESADVFIHSQPPNALDSGCSSPHNSGLLDALVYQAKTLSSKNNCSDKSSNSSVATPGDIAESSALNMYATEWEDYADPVSPFCATSILNECPAVSTNGNSWDEWESFQTITGNNNVKMQSVDQVWAPKSENQYMSNLTWPDVLLTSEWHDLYSENGVNQTIMTDASDDFSRQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01878 504 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Cca10g01878 504 Gene3D - 89 135 - -
Cca10g01878 504 CDD SANT 36 81 IPR001005 -
Cca10g01878 504 CDD SANT 89 130 IPR001005 -
Cca10g01878 504 Gene3D - 33 86 - -
Cca10g01878 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Cca10g01878 504 MobiDBLite consensus disorder prediction 1 33 - -
Cca10g01878 504 SMART sant 33 83 IPR001005 -
Cca10g01878 504 SMART sant 86 134 IPR001005 -
Cca10g01878 504 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Cca10g01878 504 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 497 - -
Cca10g01878 504 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
Cca10g01878 504 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Cca10g01878 504 SUPERFAMILY Homeodomain-like 33 128 IPR009057 -
Cca10g01878 504 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 497 - -
Cca10g01878 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01878 Cca-Chr10 35635785 35639396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01878 31 497 MYB Transcription Factor Family AT3G11440 43.381 4.82e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g01878 Myb_DNA-binding 1.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01878 10 35635785 35639396 Cca04g01758 04 31380991 31384571 PCT