Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01875 ATGTCTCATCTTCACACACAAGTTAAACAAGGAAAGCAACACGTCAACAGCCATGAAAAACATGAAACGATTGAACAATCGGTTTGTTCTGTGTGTAATAATAGAAGACCAAAATTTGAGTGGAAGAGAGACTTCACATATGCTGAACTGCATGCAGCCACACGTGGTTTTTCCCCCACGAACTATCTGTCAGAAGGAGGGTTTGGTGCTGTCTTCAAAGGGGAGTTTTGCGGTCACAAGATTGCTGTTAAGCAACACAAGTGTGAAAACCACAAAGGAGAGAAGGAATTCAAGTCTGAAGTTGATGCACTCAGCAAAGCAAGACATGAGAATGTGGTCATGCTGTTAGGATCATGCACCGAAGGAAACAATAGACTTCTTGTTTATGAATATGTGTGCAATGGTTCATTGAACCAACATTTATCAGAACATTCTCGTAAACTTCTTAGTTGGCAAGACAGGCTGAAAGTGGCTGATGGTGCTGCCAAAGGGTTGCTATACCTGCACGAGAACAACATCATACACAGAGATATGACACCAAACAACATTCTTCTTACACATGATAATAAAGTACTGCTAGGCGATTTTGGTTTGGCTAGAACTTTAATTGAAGACTCCTCATACTCCACGGACTGTGTTGGGAATCTGGCTTATATGGCACCAGAATATGCGGAATTTGGAAAAGTTTCAATGAAGACAGATGTGTATTCTTTTGGGGTGGTTCTACTACAGCTAATTACTGGATTGAGGACCACAGACAAACGAGTTGGAGAAAAGGGTCTAGTGGGATGGGCAAGACCACTACTAAGAGAAGGGAAATGCCAATCTCTTATTGATGGAAGGATGATCAATTCTCATGACTGCCATCAACTCTATTGGATGAGTCGTCTAGCTGAAAATTGTCTTCTGAGGGACCCTCATAAGCGATTGCATATGAGTAGAGTGGTGAAAGCCTTGAGTGAGATAGGCCAAGGTTATTGTTGCAATGTGATGAAAAACAAACCCCTTAACGTATCTGCAAGCCACTCTAAATTAGAAGATGATAAACAGGGCTCTTCAGACCTTGAAGGTGGAATTCAATAG 1083 0.4164 MSHLHTQVKQGKQHVNSHEKHETIEQSVCSVCNNRRPKFEWKRDFTYAELHAATRGFSPTNYLSEGGFGAVFKGEFCGHKIAVKQHKCENHKGEKEFKSEVDALSKARHENVVMLLGSCTEGNNRLLVYEYVCNGSLNQHLSEHSRKLLSWQDRLKVADGAAKGLLYLHENNIIHRDMTPNNILLTHDNKVLLGDFGLARTLIEDSSYSTDCVGNLAYMAPEYAEFGKVSMKTDVYSFGVVLLQLITGLRTTDKRVGEKGLVGWARPLLREGKCQSLIDGRMINSHDCHQLYWMSRLAENCLLRDPHKRLHMSRVVKALSEIGQGYCCNVMKNKPLNVSASHSKLEDDKQGSSDLEGGIQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01875 360 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 342 - -
Cca10g01875 360 Pfam Protein tyrosine and serine/threonine kinase 62 319 IPR001245 GO:0004672|GO:0006468
Cca10g01875 360 PANTHER OS01G0253100 PROTEIN 4 342 IPR045271 GO:0004714|GO:0006468
Cca10g01875 360 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g01875 360 ProSiteProfiles Protein kinase domain profile. 57 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01875 360 Gene3D Transferase(Phosphotransferase) domain 1 132 337 - -
Cca10g01875 360 MobiDBLite consensus disorder prediction 341 360 - -
Cca10g01875 360 SUPERFAMILY Protein kinase-like (PK-like) 41 319 IPR011009 -
Cca10g01875 360 Gene3D Phosphorylase Kinase; domain 1 29 131 - -
Cca10g01875 360 ProSitePatterns Tyrosine protein kinases specific active-site signature. 173 185 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01875 Cca-Chr10 35584081 35608104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01875 45 322 Trihelix Transcription Factor Family AT5G38560 43.643 1.35e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca10g01875 PK_Tyr_Ser-Thr 8.9e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01875 10 35584081 35608104 Cca04g01759 04 31419598 31425403 PCT