Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01853 ATGGCCACTGAAAAGCTTAGATGTTGTGCAAACTTCCTTGAAAACTCTAAGCATCACTTTGCCATGATCGCTTTGCAGTTTGGCTATGCAGGCATGAACATTATCAGTAAGGTTTCCCTCAACCGTGGCATGAGCCACTATGTTCTCGTTGTTTATCGCCATGCCTTTGCCACTGCTGTCGTCGCTCCATTTGCCCTCATCTTTGAAAGGAAAGCTCAGCCAAGGATAACATTCTCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGGGCCTGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACGTCCCCAACTTTCTCATGTGCATTGAGTAATGTGCTTCCTGCAATGACTTTTGTGATGGCAGTTTTATGCAGGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCAAAGGTGGTGGGAACATTGGTGACTGTGGCTGGGGCCTTGTTGATGACCTTGTACAAAGGCCCTGTAGTGGGGATGTTTTGGAATAAACAAGCACTTCATCATAGGCAAATCAATAGTAATGCAACAAGTGCCACATCTTCAGACAAGGATTGGTTCATAGGCTCCATTTTCCTAATCATTGCCTCCCTTGCCTGGTCATGCCTCTTTGTTTTACAAGCCAAAGCCATTGAAACCTACAAAAATCACCAGCTAAGCCTCACATTTCTTATCTGCTTCATGGGCACTCTTCAAGCTATTGCTGTTACTTTTGTTATGGAACGCAAGCCATCCGTGTGGACCATTGGCTGGGATATGAATTTACTTGCTGCTGCCTATGCTGGGATTGTTACATCAAGCATATCATACTATGTCCAAGGATTGGTAATTAAGAAGAAAGGGCCTGTTTTCGCAACTGCATTTAGCCCTCTCATGATGATCATTGTAGCCATCATGGGCTTCCTTATCCTTGCAGAACAGATTTTTCTTGGAGGTGTGCTTGGTGCCATCTTGATCATTATAGGCTTATACTCTGTTCTATGGGGAAAGCACAAAGAACTAGTGGAGAACAAAGTGACAGAGGATATACCCTTGTCTCTAAAGGGTGTTCAGGTTGATGAAAATCCAGGGTCACTCACTGATCAGAAATTCGATTCCAACAAGTTCTCTTCACATGTTATTAACGTTCCTATCCCTGAGGATCCCACGAAAGTTAACAATATTAACCAAAGAAGTCAAGAATAA 1209 0.4276 MATEKLRCCANFLENSKHHFAMIALQFGYAGMNIISKVSLNRGMSHYVLVVYRHAFATAVVAPFALIFERKAQPRITFSIFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCALSNVLPAMTFVMAVLCRMEKINMKKVRCQAKVVGTLVTVAGALLMTLYKGPVVGMFWNKQALHHRQINSNATSATSSDKDWFIGSIFLIIASLAWSCLFVLQAKAIETYKNHQLSLTFLICFMGTLQAIAVTFVMERKPSVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIIVAIMGFLILAEQIFLGGVLGAILIIIGLYSVLWGKHKELVENKVTEDIPLSLKGVQVDENPGSLTDQKFDSNKFSSHVINVPIPEDPTKVNNINQRSQE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01853 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 236 340 - -
Cca10g01853 402 PANTHER WAT1-RELATED PROTEIN 14 373 IPR030184 GO:0016021|GO:0022857
Cca10g01853 402 PANTHER WAT1-RELATED PROTEIN 14 373 - -
Cca10g01853 402 Pfam EamA-like transporter family 196 335 IPR000620 GO:0016020|GO:0016021
Cca10g01853 402 Pfam EamA-like transporter family 21 159 IPR000620 GO:0016020|GO:0016021
Cca10g01853 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01853 Cca-Chr10 34935685 34938899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01853 1 392 Nodulin-like Gene Family AT5G07050 64.619 0.0 517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01853 10 34935685 34938899 Cca10g01853 10 34935685 34938899 ECH
Cca10g01853 10 34935685 34938899 Cca04g01775 04 31966137 31969734 PCT