Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01842 ATGGGTGCAGCTGAAGATCCCGTCAACAACACAGCAGGGTCAACAGGAAGTCTGGAAAACCACGCTACAGGTCATACTGAAAATCCTATAAAGGACAATGTTGGTTCTTCAGAAAATCCTGTAAAGGACAAAGCACCAGGTGCAGAAAACCCTGTAAGCAATCAAGCAGGTAATGCAGAAATTCCTAAAGCTAGCAGTGCTGAAAATCCTGTAAGTGACCAAACAGATGTTAAACAAATTCCTGGAAGTGGAGGTAGGGCAGAAAATCTGTTTAATGACCAAGCAGGTGGGGCAGAAAATCCTTCAAATGATGGTGAAGCAACTGGTGGTGCAGAAAACTCTGTAAAAAACAAAGCAGGCACATCAGAAAATAATATGAATGTCAAAAATGATGGCATAGAAAATCCTGTAAACAATAATTCTGATGGTGTTGAAAATCATTTAAGCAACCAAACAGATGCTGCAGAAAATCTTGTAAATGACAAACAGGATCCTGCAGGAAGTTTTGTAGAAAATAAAGCAGATGCTCTTGATTCCCCTATAAACAGCATAGTTAAGGCTGTTGAGTTCCCTGCAAGCAGCAAAGCAAATGCTGTTGAATCCCCTGCAAGCTGCAAACCAGATTGCCTTCCAGAAGAAGCAAAGGAGATACTGATATCATTGGCAAGTAAATGGGAGGATGTACTTGATGCAAATGCATTGCAGGTGTTCCCTCTCAAAGGGGCAATGACAAATAAGGTATACCAGATAAAGTGGCCAACTACGACAGGGGAAACATCCCGAAAGGTTCTTGTTAGAATGTATGGTGAGGGTGTGGATGTGTTCTTTGACAGGGATAAAGAAATCCGAACATTTGAATTCATGTCAAAGAATGGGCAAGGTCCTCTTCTACTAGGACGATTTACAAATGGCCGTGTTGAAGAATTTATCCATGCACGGACATTATCAGCATCTGATCTACGTGATCCATCTATTTCTGCTCTTATAGCGGCCAAAATGAAGGAGTTCCATGAACTAGATATGCCTGGTGAAAAGAAAGTCCACCTCTGGGATAGGTTGCGAAATTGGCTTAGTGAAGCCAAACGTTTATCATCCCCTAAAGAAGTTGAAGCTTTTTATTTGGACACAATTGACAAAGAAATCTCTATGCTGGAAAAGGAACTTTCAGGTGCAGACCAACTCATAGGATTTTGCCACAATGATTTACAATATGGTAATATAATGCTTGACGAAGAGACCAATTCTGTGACCATCATAGACTATGAATATGCTAGTTATAATCATGTAGCATTTGATATAGCAAACCACTTTTGTGAGATGGCTGCTAACTATCATACAGAAGAGCCTCATATTCTTGACTACACTAAATATCCTGATTTAGAGGAGCGTCGAAGATTTGTCAAGGCATATTTGAGTACCTCCGGAGAGCAATCTAGTGACAATAAGGTGGAGCAGCTACTTCAAGAGATTGAGAAGTATACACTTGCAAATCATCTATTTTGGGGCGTTTGGGGAATAATTTCGGCACAAGTAAACACTATCGACTTTGACTACAAGGAGTATGCCAAACAGAGGTTTCAAGAGTACTGGGCAAGGAAACCTTATCTTTTAATAAACACTGAAGCACCTCCTTATAATGCGGCTGAGGGAACAGGAGAGCAAGCCCCATCAGGGCACCAAAGGAGGAACTCTGGTATCTTCAGGAAGATGAAGAAAGTTTTGGGTCTCGGTTTGTTCAGGTCTAAGAGCTAG 1752 0.411 MGAAEDPVNNTAGSTGSLENHATGHTENPIKDNVGSSENPVKDKAPGAENPVSNQAGNAEIPKASSAENPVSDQTDVKQIPGSGGRAENLFNDQAGGAENPSNDGEATGGAENSVKNKAGTSENNMNVKNDGIENPVNNNSDGVENHLSNQTDAAENLVNDKQDPAGSFVENKADALDSPINSIVKAVEFPASSKANAVESPASCKPDCLPEEAKEILISLASKWEDVLDANALQVFPLKGAMTNKVYQIKWPTTTGETSRKVLVRMYGEGVDVFFDRDKEIRTFEFMSKNGQGPLLLGRFTNGRVEEFIHARTLSASDLRDPSISALIAAKMKEFHELDMPGEKKVHLWDRLRNWLSEAKRLSSPKEVEAFYLDTIDKEISMLEKELSGADQLIGFCHNDLQYGNIMLDEETNSVTIIDYEYASYNHVAFDIANHFCEMAANYHTEEPHILDYTKYPDLEERRRFVKAYLSTSGEQSSDNKVEQLLQEIEKYTLANHLFWGVWGIISAQVNTIDFDYKEYAKQRFQEYWARKPYLLINTEAPPYNAAEGTGEQAPSGHQRRNSGIFRKMKKVLGLGLFRSKS 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01842 583 SUPERFAMILY Protein kinase-like (PK-like) 207 537 IPR011009 -
Cca10g01842 583 MobiDBLite consensus disorder prediction 1 147 - -
Cca10g01842 583 Pfam Choline kinase N terminus 205 233 IPR007521 GO:0016773
Cca10g01842 583 MobiDBLite consensus disorder prediction 95 147 - -
Cca10g01842 583 MobiDBLite consensus disorder prediction 8 35 - -
Cca10g01842 583 PANTHER CHOLINE/ETHANOALAMINE KINASE 198 547 - -
Cca10g01842 583 Gene3D Phosphorylase Kinase; domain 1 223 309 - -
Cca10g01842 583 PANTHER CHOLINE KINASE 2-RELATED 198 547 - -
Cca10g01842 583 MobiDBLite consensus disorder prediction 51 79 - -
Cca10g01842 583 Pfam Choline/ethanolamine kinase 260 461 - -
Cca10g01842 583 Gene3D - 269 530 - -
Cca10g01842 583 CDD ETNK_euk 234 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01842 Cca-Chr10 34505608 34513690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01842 210 541 Acyl Lipid Metabolism Gene Families AT1G74320 68.675 1.88e-177 503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01842 10 34505608 34513690 Cca10g01842 10 34505608 34513690 ECH
Cca10g01842 10 34505608 34513690 Cca04g01780 04 32217858 32226903 PCT