Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01722 ATGTCTCCACAAAGTGTAGCTCTTTCACTTTTCACCACCGTGTTTCTCTCATTTGGCGTGTGTTTTGGGTCTTACCTAGAGGACACACACGACCTAAATAATTATCAACCTAATGATGCCAGAGATGACACTAAGGCATTTGAGAAGGCATGGAATGAGGCATGTTCTACAGGGGGTGTTCTTTTAGTCCCTCGTGGCAAGACCTATCATTTAAAGCAAATCATTTTTTCAGGACCATGCCTACCCAATACTTCCTTCAGGGTCTTTGGAACAATCAAAGCATGGCCTAAAATGTCAGCATACCAAAAAGATAGATTACTCTGGATTAAGTTTCTTAATGTCGCGAATCTCATTGTTGATGGTGGTGGCATTATCAATGGTAATGGGAGAAAATGGTGGGAAAACTCTTGCAAAATCAACAAAAGCCTTCCATGCAAACCGGCACCAACTGCCGTGCAATTCCTCGGATGCAACAACTTGAGTGTGACAAACCTTAAGTTCAAAAATGCACAACAAATGCATGTTAGGTTTCAGAGATGCCACAATGTTACAGCTTCATATTTGAGTGTGACAGCACCAGAGCACAGCCCCAACACCGATGGAATTCACGTCACAGAGACACAAAACATAGTCATAACGAATAGTGTCATTGGAACAGGTGATGATTGTATCTCCATAGTAAGTGGGTCTCAAGATGTTCTTGTCAGAAATGTCAGGTGTGGACCAGGGCATGGAATCAGCATTGGGAGCTTAGGAGCTGGCAAGTCAGAAGCTCAAGTCTCGAACGTGTTAGTGGATGGAGCCATCATCACAGGAACAAGTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCCGGCTATGTGAAAAACATCAAATTTACGAATATAGAAATGCGAAATGTGAAGAATCCCATAATTGTGGATCAAAACTACTGTGACAAGAGAAATGCTTGCCCTCAGCAGGACTCAGCGGTGCAAGTGAGCCACATAATGTACCAAAACATCATAGGAACAAGTGCTTCAGAAGAAGCAATCAAATTTGACTACACACTATTTTTCCTCATCACCGTAACAGCGCACAACACTTCTCAAGTAAGTCACCTCCGTAAACGTAACCTCCGCACACCGCTCACCGCACACTTTTTCTCAAATTTGAAGTACCAACTCAATGAGATAGAAGACAATGCTTGTAATCTGAAAAATGTAAAAGCAGATGTTGGCTGA 1227 0.4246 MSPQSVALSLFTTVFLSFGVCFGSYLEDTHDLNNYQPNDARDDTKAFEKAWNEACSTGGVLLVPRGKTYHLKQIIFSGPCLPNTSFRVFGTIKAWPKMSAYQKDRLLWIKFLNVANLIVDGGGIINGNGRKWWENSCKINKSLPCKPAPTAVQFLGCNNLSVTNLKFKNAQQMHVRFQRCHNVTASYLSVTAPEHSPNTDGIHVTETQNIVITNSVIGTGDDCISIVSGSQDVLVRNVRCGPGHGISIGSLGAGKSEAQVSNVLVDGAIITGTSNGVRIKTWQGGSGYVKNIKFTNIEMRNVKNPIIVDQNYCDKRNACPQQDSAVQVSHIMYQNIIGTSASEEAIKFDYTLFFLITVTAHNTSQVSHLRKRNLRTPLTAHFFSNLKYQLNEIEDNACNLKNVKADVG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01722 408 PANTHER - 36 351 - -
Cca10g01722 408 PANTHER POLYGALACTURONASE QRT2 36 351 - -
Cca10g01722 408 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Cca10g01722 408 SMART pbh1 230 250 IPR006626 -
Cca10g01722 408 SMART pbh1 289 310 IPR006626 -
Cca10g01722 408 SMART pbh1 260 281 IPR006626 -
Cca10g01722 408 SMART pbh1 207 228 IPR006626 -
Cca10g01722 408 SMART pbh1 157 206 IPR006626 -
Cca10g01722 408 Gene3D - 36 373 IPR012334 -
Cca10g01722 408 SUPERFAMILY Pectin lyase-like 37 348 IPR011050 -
Cca10g01722 408 Pfam Glycosyl hydrolases family 28 61 349 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01722 Cca-Chr10 31389098 31403835 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00138 04 1295626 1298927 Cca10g01722 10 31389098 31403835 PCT
Cca04g01867 04 35492014 35493972 Cca10g01722 10 31389098 31403835 PCT