Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca10g01661 | ATGATGGAGTCAGAAGGAGAAGCTGGGGCAAAGCCGATGAAAGCATTGGGTGGCCAAGTCTGCCAGATCTGTGGTGATAATATTGGGAGCAATGCGGATGGCAATCCATTCATCGCTTGCGATGTTTGTGCTTTCCCTGTCTGCAGGCCATGCTATGAATATGAAAGGAAGGATGGAAATCAGTCTTGCCCTCAGTGCAAGACCCGGTACAAGAGGCACAAAGAGCGCATGTTGGGCTGGCAAATGGCATATGGGCGAGGGGAGGAGGTTGGTGCTCCAAATTATGATAAGGAAGTTTCTCACAATCACATTCCTCTTCTCTCCGGTGGACAAGAGGTAGTTTCTGGAGAATTATCTGCAGCCTCACCTGAGAGGCTGTCAATGGCATCTCCAGGTGGCCGTGGGAAGCGTGTCCACAATCTTACATATTCATCTGAAATGAATCAATCACCAAATATAAGGGTTGGGGATCCTGGGTTGGGAAATGTGGCATGGAAAGAAAGAGTTGATGGCTGGAAAATGAAGCAAGATAAGAATGCTGCTCCAATGAGCACAGGCCAAGCTACTTCTGAAAGAGGAGCTGGAGATATTGATGCCAGTACTGATGTGCTTGTGGATGATTCCTTGTTAAATGATGAGGCTCGGCAACCTCTCTCCAGGAAGGTTTCTATTCCATCATCTAGGATAAATCCATACCGTATGGTCATTGCTCTGCGGCTGGTTATCCTATGCATTTTTCTGCATTATCGAATAACAAATCCTGTGCCCAATGCATATGCATTGTGGTTGATATCAGTTATATGTGAGATTTGGTTTGCCATATCTTGGATATTGGATCAGTTCCCCAAGTGGCTCCCTGTGAACCGGGAAACATATCTTGACAGACTTGCACTAAGATATGATCGGGAAGGGGAACCATCACAGCTAGCAGCTGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAAGAGCCCCCACTTGTGACTGCTAACACTGTACTATCTATTCTTTCTGTTGACTACCCAGTGGATAAGGTCTCCTGTTATGTCTCTGATGATGGTGCTGCTATGTTGACATTTGAAGCACTAGCTGAGACTTCAGAATTTGCAAGGAAATGGGTTCCTTTCTCTAAAAAATATAACATTGAACCCCGAGCACCTGAGTGGTATTTTGCACAGAAGATTGACTACTTGAAAGATAAGGTTCAGCCATCATTTGTCAAAGATCGTAGAGCAATGAAGAGAGAATATGAAGAATTTAAAATTCGTGTCAATGGACTTGTTGCGAAGGCACAAAAGGTTCCTGAAGAAGGATGGGTGATGCAAGATGGCACACCATGGCCTGGAAACAACACTAGAGACCATCCAGGGATGATTCAGGTAGTTTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGTAATGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGGTTCCAACATCACAAGAAGGCTGGTGCCATGAATGCACTTGTTCGAGTGTCAGCGGTCCTCACTAATGGTCCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAAGCCTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTTGGGAAAAATGTTTGCTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGAAATGATCGATATGCCAACCGTAATACTGTTTTCTTTGATATAAATTTGAGAGGCTTGGATGGAATTCAAGGTCCTGTTTATGTGGGTACTGGATGTGTCTTCAATAGAACAGCTTTATATGGTTACGAGCCTCCTATTAAACCCAAGCATAAAAAGCTTGGGGTGCTTTCTTCACTCTGTGGTGGTAACCGAAAAAAGAAATCAAAATCTAGCAAGAAAGGCTCAGACAAGAAAAAATCAAGCAAGCATGTTGACCCAACTGTGCCCATCTTCAGTCTTGAGGATATAGAAGAAGGGGTGGAAGGTGCTGGATTTGATGATGAGAAGTCACTTCTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTCTTTGTTGCCTCTACACTCATGGAAAATGGTGGTGTTCCTCAGTCTGCAACTCCAGAAACACTTCTTAAGGAGGCTATTCATGTTATCAGTTGTGGTTATGAGGATAAAACAGAATGGGGAAGTGAGATAGGATGGATCTATGGGTCTGTCACAGAAGATATTCTTACTGGATTCAAGATGCATGCCCGTGGTTGGAGGTCCATCTATTGCATGCCCAAGCTCCCAGCATTTAAAGGTTCAGCTCCTATCAATCTTTCAGATCGTCTGAACCAAGTGCTTCGGTGGGCTTTAGGTTCGGTGGAAATTCTTCTAAGTCGACATTGTCCCATCTGGTATGGTTATAGTGGAAGGCTAAAGTGGCTCGAGAGGTTTGCATATGTGAACACCACAATCTATCCAGTCACTTCCATTCCCCTGCTCATGTATTGTACCTTACCTGCTGTCTGTCTTCTGACTAACAAGTTCATTATCCCACAGATTAGTAACATTGCAAGTATATGGTTTATCTCTCTCTTTCTTTCCATCTTCGCGACCGGTATCCTTGAGATGAGGTGGAGTGGTGTTGGAATCGACGAGTGGTGGAGAAATGAACAATTTTGGGTCATCGGTGGTGTTTCAGCCCATCTTTTCGCCGTCTTCCAAGGCTTACTCAAAGTACTTGCCGGAATTGACACCAACTTCACTGTTACCTCAAAGGCATCAGATGAGGATGGAGACTTTGCAGAACTCTACATGTTCAAATGGACAACCCTTCTCATCCCACCCACAACACTTCTCATCATAAACCTGGTGGGGGTTGTTGCAGGTATCTCCTATGCCATCAACAGTGGCTACCAATCATGGGGTCCCCTCTTTGGTAAGCTTTTCTTTGCATTTTGGGTGATTATCCATCTCTACCCCTTCCTCAAAGGTCTCATGGGACGCCAGAACAGAACACCAACCATTGTGGTGGTCTGGTCCATTCTTCTTGCATCCATTTTCTCTCTGTTGTGGGTCCGAATCGACCCGTTTACGACGAGAGTCACTGGCCCTGATGTTGAGCAGTGTGGAATCAACTGCTAG | 3126 | 0.4463 | MMESEGEAGAKPMKALGGQVCQICGDNIGSNADGNPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKERMLGWQMAYGRGEEVGAPNYDKEVSHNHIPLLSGGQEVVSGELSAASPERLSMASPGGRGKRVHNLTYSSEMNQSPNIRVGDPGLGNVAWKERVDGWKMKQDKNAAPMSTGQATSERGAGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIALRLVILCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRVNGLVAKAQKVPEEGWVMQDGTPWPGNNTRDHPGMIQVVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKLGVLSSLCGGNRKKKSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLKWLERFAYVNTTIYPVTSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca10g01661 | 1041 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 457 | 604 | IPR029044 | - | |
| Cca10g01661 | 1041 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 135 | 1041 | - | - | |
| Cca10g01661 | 1041 | Pfam | Cellulose synthase | 312 | 1034 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
| Cca10g01661 | 1041 | ProSiteProfiles | Zinc finger RING-type profile. | 21 | 67 | IPR001841 | - | |
| Cca10g01661 | 1041 | Pfam | Zinc-binding RING-finger | 11 | 75 | IPR027934 | - | |
| Cca10g01661 | 1041 | SUPERFAMILY | RING/U-box | 6 | 75 | - | - | |
| Cca10g01661 | 1041 | PANTHER | CELLULOSE SYNTHASE | 3 | 80 | - | - | |
| Cca10g01661 | 1041 | PANTHER | CELLULOSE SYNTHASE | 135 | 1041 | - | - | |
| Cca10g01661 | 1041 | MobiDBLite | consensus disorder prediction | 620 | 645 | - | - | |
| Cca10g01661 | 1041 | CDD | mRING-HC-C4C4_CesA_plant | 19 | 69 | - | - | |
| Cca10g01661 | 1041 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 83 | IPR013083 | - | |
| Cca10g01661 | 1041 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 326 | 854 | IPR029044 | - | |
| Cca10g01661 | 1041 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 3 | 80 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca10g01661 | Cca-Chr10 | 29374903 | 29382412 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca10g01661 | 10 | 29374903 | 29382412 | Cca10g01661 | 10 | 29374903 | 29382412 | ECH | |
| Cca04g01909 | 04 | 36824366 | 36834034 | Cca10g01661 | 10 | 29374903 | 29382412 | PCT |